Variant report

Variant	rs34867394
Chromosome Location	chr9:18657429-18657430
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13286493	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13286662	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13286678	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13287108	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13287935	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13291906	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13292378	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13298248	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13298257	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13298652	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2095101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2095102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34005652	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34361890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34430407	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34436139	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34476081	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34498930	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35083940	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35277167	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35568743	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35642330	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35743622	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35808221	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35899945	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59047805	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71506882	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71506891	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv428536	chr9:18512807-18667760	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv892691	chr9:18519699-18805483	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv831523	chr9:18592398-18753451	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
11	nsv892694	chr9:18599029-18767830	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
12	nsv1024591	chr9:18618450-18702305	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv892695	chr9:18631044-18680771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv466281	chr9:18651444-18663543	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv613725	chr9:18651444-18663543	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv892696	chr9:18653773-18663543	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18631000-18666400	Weak transcription	Aorta	Aorta
2	chr9:18637000-18666400	Weak transcription	HSMMtube	muscle
3	chr9:18639600-18658200	Weak transcription	NHLF	lung
4	chr9:18643600-18658400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:18648200-18683200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:18649400-18658200	Weak transcription	HUVEC	blood vessel
7	chr9:18650000-18658400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:18651600-18664800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:18655000-18661000	Genic enhancers	Osteobl	bone
10	chr9:18655000-18661600	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:18656000-18658200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:18656400-18658200	Strong transcription	HSMM	muscle
13	chr9:18656800-18658000	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr9:18657000-18658800	Weak transcription	Adipose Nuclei	Adipose
15	chr9:18657400-18657600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:18657400-18657600	ZNF genes & repeats	Fetal Stomach	stomach
17	chr9:18657400-18658000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:18657400-18658000	Strong transcription	NH-A	brain
19	chr9:18657400-18658200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:18657400-18660400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:18657400-18661600	Genic enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links