Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11174295	0.86[JPT][hapmap]
rs348631	1.00[CHB][hapmap];0.96[JPT][hapmap]
rs348632	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs348633	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs348640	0.86[JPT][hapmap]
rs348643	0.86[JPT][hapmap]
rs348644	0.83[JPT][hapmap]
rs348646	0.86[JPT][hapmap]
rs348647	0.86[JPT][hapmap]
rs348648	0.82[JPT][hapmap]
rs348649	0.86[JPT][hapmap]
rs348651	0.83[JPT][hapmap]
rs348656	0.88[ASN][1000 genomes]
rs348658	0.87[JPT][hapmap]
rs348659	0.89[ASN][1000 genomes]
rs348665	1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[ASN][1000 genomes]
rs348666	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs348667	1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[ASN][1000 genomes]
rs348668	0.97[ASN][1000 genomes]
rs348670	0.86[JPT][hapmap]
rs348671	0.83[JPT][hapmap]
rs348680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs348683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs348684	0.98[ASN][1000 genomes]
rs348689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs348690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs348691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs348693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62422600-62429000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62426000-62427400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr12:62426800-62427200	Enhancers	HMEC	breast

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