Variant report

Variant	rs34871682
Chromosome Location	chr6:38477642-38477643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10947740	0.90[ASN][1000 genomes]
rs10947744	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923737	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7740763	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38444600-38496200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:38452400-38496600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:38454400-38486400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:38468600-38486400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:38471600-38484200	Weak transcription	Right Atrium	heart
6	chr6:38471600-38493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:38472000-38482400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:38472000-38493800	Weak transcription	Lung	lung
9	chr6:38472400-38481800	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:38474400-38478200	Enhancers	HSMMtube	muscle
11	chr6:38476000-38477800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:38476000-38477800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:38476000-38478000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:38476000-38478000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:38476000-38478200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:38476000-38478200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:38476000-38478200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:38476000-38478400	Enhancers	HSMM	muscle
19	chr6:38476200-38478000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:38476200-38478800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:38476400-38477800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:38476400-38478000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:38476400-38478000	Enhancers	Fetal Kidney	kidney
24	chr6:38476400-38478000	Enhancers	Fetal Lung	lung
25	chr6:38476400-38478000	Enhancers	A549	lung
26	chr6:38476400-38478200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr6:38476400-38478200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:38476400-38478200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:38476400-38478200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr6:38476400-38478200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:38476400-38478200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:38476400-38478200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:38476400-38478200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:38476400-38478200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:38476400-38478200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr6:38476400-38478200	Enhancers	NHDF-Ad	bronchial
37	chr6:38476400-38478400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:38476600-38478000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:38476600-38478000	Enhancers	Stomach Smooth Muscle	stomach
40	chr6:38476600-38478200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:38476600-38478200	Enhancers	NHLF	lung
42	chr6:38476600-38478200	Enhancers	Osteobl	bone
43	chr6:38476600-38478600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:38476600-38499800	Weak transcription	Pancreas	Pancrea
45	chr6:38476800-38477800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:38476800-38478000	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr6:38476800-38478200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:38476800-38481400	Weak transcription	Fetal Brain Male	brain
49	chr6:38476800-38481800	Weak transcription	Brain Substantia Nigra	brain
50	chr6:38476800-38498800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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