Variant report

Variant	rs34881657
Chromosome Location	chr12:47295449-47295450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12810051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12813857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12832186	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2249315	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2250202	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2465203	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2711696	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2715780	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34666797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35024790	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7132156	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7310091	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs74082953	0.90[EUR][1000 genomes]
rs74082963	0.94[EUR][1000 genomes]
rs74082966	0.94[EUR][1000 genomes]
rs7980196	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47285200-47298400	Weak transcription	HSMM	muscle
2	chr12:47285400-47297400	Weak transcription	NHDF-Ad	bronchial
3	chr12:47287600-47298400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr12:47291400-47298800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:47292600-47297600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:47294600-47295600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:47294600-47298000	Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr12:47294800-47295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:47295000-47295600	Enhancers	Dnd41	blood
10	chr12:47295200-47295800	Enhancers	Liver	Liver
11	chr12:47295400-47295600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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