Variant report

Variant	rs34884619
Chromosome Location	chr5:36612706-36612707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4591778	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881025	chr5:36575021-36613053	Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2762516	chr5:36599385-36613201	Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36605400-36612800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr5:36607800-36613600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:36608200-36613400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:36608400-36615400	Weak transcription	HSMMtube	muscle
5	chr5:36608400-36617200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:36608600-36612800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:36608600-36612800	Weak transcription	Fetal Lung	lung
8	chr5:36608600-36613000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:36608600-36617200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:36608800-36612800	Weak transcription	Placenta	Placenta
11	chr5:36608800-36613600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:36608800-36614800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:36608800-36639600	Weak transcription	Esophagus	oesophagus
14	chr5:36609000-36614800	Weak transcription	NH-A	brain
15	chr5:36609200-36612800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:36609200-36613800	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr5:36609200-36617200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:36609400-36613600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:36609400-36619200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:36609400-36619800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr5:36609800-36613200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:36609800-36614400	Strong transcription	HMEC	breast
23	chr5:36610000-36613800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:36610000-36614200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:36610000-36617200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:36610400-36612800	Weak transcription	Left Ventricle	heart
27	chr5:36610400-36613400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:36610400-36613400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:36610400-36613600	Strong transcription	NHEK	skin
30	chr5:36610600-36629800	Weak transcription	NHDF-Ad	bronchial
31	chr5:36610800-36613800	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:36611000-36613600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:36611000-36614000	Strong transcription	HSMM	muscle
34	chr5:36611000-36633600	Weak transcription	Brain Germinal Matrix	brain
35	chr5:36611200-36612800	Weak transcription	Right Atrium	heart
36	chr5:36611200-36614600	Weak transcription	Psoas Muscle	Psoas
37	chr5:36611200-36630000	Weak transcription	Right Ventricle	heart
38	chr5:36611600-36613800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr5:36611600-36614000	Strong transcription	Fetal Muscle Leg	muscle
40	chr5:36611600-36614400	Strong transcription	Hela-S3	cervix
41	chr5:36611600-36615000	Strong transcription	Fetal Muscle Trunk	muscle
42	chr5:36611800-36613000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr5:36611800-36614800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:36612000-36613000	Weak transcription	Adipose Nuclei	Adipose
45	chr5:36612000-36613400	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr5:36612200-36612800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:36612200-36612800	Enhancers	Brain Cingulate Gyrus	brain
48	chr5:36612200-36613000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr5:36612200-36613400	Weak transcription	Brain Angular Gyrus	brain
50	chr5:36612200-36614800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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