Variant report

Variant	rs34885337
Chromosome Location	chr7:56100083-56100084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:56092875..56095055-chr7:56099185..56100786,2	MCF-7	breast:
2	chr7:56093650..56095156-chr7:56099679..56101422,2	K562	blood:
3	chr7:56095555..56097443-chr7:56098499..56101480,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13240361	1.00[ASW][hapmap]
rs2304375	1.00[ASW][hapmap]
rs3816089	1.00[ASW][hapmap]
rs4307293	1.00[ASW][hapmap]
rs4948089	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
6	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
11	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
12	nsv970482	chr7:56094574-56104957	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56049200-56101600	Weak transcription	Small Intestine	intestine
2	chr7:56063600-56101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:56063600-56101200	Weak transcription	NHLF	lung
4	chr7:56064400-56101400	Weak transcription	Gastric	stomach
5	chr7:56065000-56101400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:56065000-56101400	Weak transcription	Colonic Mucosa	Colon
7	chr7:56065400-56101400	Weak transcription	Fetal Brain Male	brain
8	chr7:56067200-56101400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:56067400-56100800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:56068200-56101200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:56075400-56101400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:56077800-56100600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:56078200-56101200	Weak transcription	Colon Smooth Muscle	Colon
14	chr7:56082200-56101200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:56082600-56101200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:56086000-56100200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:56086800-56101200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr7:56087400-56101400	Weak transcription	Brain Germinal Matrix	brain
19	chr7:56087600-56101200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:56087600-56101400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:56087800-56101400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:56088000-56101400	Weak transcription	Esophagus	oesophagus
23	chr7:56088000-56101600	Weak transcription	Lung	lung
24	chr7:56088600-56101600	Weak transcription	Spleen	Spleen
25	chr7:56088800-56101400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:56088800-56101400	Weak transcription	Aorta	Aorta
27	chr7:56088800-56101400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:56089000-56100800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:56089000-56101200	Weak transcription	Fetal Kidney	kidney
30	chr7:56089000-56101200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:56089000-56101200	Weak transcription	Osteobl	bone
32	chr7:56089000-56101400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr7:56089000-56101400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:56089000-56101400	Weak transcription	Left Ventricle	heart
35	chr7:56089000-56101400	Weak transcription	Ovary	ovary
36	chr7:56089000-56101400	Weak transcription	Pancreas	Pancrea
37	chr7:56089000-56101400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr7:56089000-56101400	Weak transcription	Right Ventricle	heart
39	chr7:56089200-56101200	Weak transcription	HSMMtube	muscle
40	chr7:56090400-56101200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr7:56091600-56101200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:56092800-56100200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:56093400-56101000	Weak transcription	HSMM	muscle
44	chr7:56093400-56101400	Weak transcription	Brain Angular Gyrus	brain
45	chr7:56093800-56101200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:56095200-56100200	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:56096000-56101400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr7:56096000-56101400	Weak transcription	Fetal Brain Female	brain
49	chr7:56096400-56101200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr7:56096600-56100800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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