Variant report
| Variant | rs34892514 |
|---|---|
| Chromosome Location | chr6:25819369-25819370 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:25811849..25814907-chr6:25817436..25821496,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1165194 | 1.00[ASN][1000 genomes] |
| rs1165197 | 1.00[ASN][1000 genomes] |
| rs1165198 | 1.00[ASN][1000 genomes] |
| rs16890967 | 1.00[ASN][1000 genomes] |
| rs17341475 | 1.00[ASN][1000 genomes] |
| rs2154220 | 1.00[ASN][1000 genomes] |
| rs2154221 | 1.00[ASN][1000 genomes] |
| rs2762352 | 0.92[ASN][1000 genomes] |
| rs34902660 | 0.92[ASN][1000 genomes] |
| rs3734525 | 1.00[ASN][1000 genomes] |
| rs3734526 | 1.00[ASN][1000 genomes] |
| rs58464496 | 1.00[AFR][1000 genomes] |
| rs59340721 | 1.00[ASN][1000 genomes] |
| rs59708869 | 1.00[AFR][1000 genomes] |
| rs60658631 | 0.92[ASN][1000 genomes] |
| rs61120493 | 1.00[ASN][1000 genomes] |
| rs61242778 | 1.00[ASN][1000 genomes] |
| rs61312043 | 1.00[AFR][1000 genomes] |
| rs6904823 | 0.92[ASN][1000 genomes] |
| rs6909034 | 0.92[ASN][1000 genomes] |
| rs6928027 | 0.84[ASN][1000 genomes] |
| rs7738984 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029920 | chr6:25638507-26585842 | Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 2 | nsv538162 | chr6:25638507-26585842 | Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 3 | nsv427747 | chr6:25641380-25908218 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 4 | nsv883489 | chr6:25789061-25821770 | Strong transcription Enhancers Weak transcription | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv1030351 | chr6:25813178-26352046 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1189 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:25816400-25821800 | Strong transcription | Liver | Liver |
