The 2.0 version of rSNPBase

Variant report

Variant rs34899242
Chromosome Location chr1:165602889-165602890
allele -/G
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165599200-165603400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:165599400-165603000 Active TSS Aorta Aorta
3 chr1:165599400-165603000 Active TSS Brain Cingulate Gyrus brain
4 chr1:165599400-165603200 Active TSS Right Atrium heart
5 chr1:165601400-165603000 Enhancers Primary T regulatory cells fromperipheralblood blood
6 chr1:165601400-165603000 Flanking Active TSS Muscle Satellite Cultured Cells --
7 chr1:165601400-165603200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr1:165601400-165603200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr1:165601400-165603200 Flanking Active TSS Cortex derived primary cultured neurospheres brain
10 chr1:165601400-165603800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
11 chr1:165601400-165604400 Flanking Active TSS Adipose Nuclei Adipose
12 chr1:165601600-165603400 Weak transcription Gastric stomach
13 chr1:165601600-165603600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
14 chr1:165601600-165603600 Enhancers Primary T helper cells PMA-I stimulated --
15 chr1:165601600-165603600 Enhancers Pancreas Pancrea
16 chr1:165601600-165604400 Weak transcription Primary T cells from cord blood blood
17 chr1:165601600-165605800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:165601600-165608400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:165601600-165615200 Weak transcription Spleen Spleen
20 chr1:165601800-165603000 Enhancers HSMMtube muscle
21 chr1:165601800-165603200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:165601800-165603200 Weak transcription Fetal Kidney kidney
23 chr1:165601800-165603400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr1:165601800-165603600 Weak transcription H1 Cell Line embryonic stem cell
25 chr1:165601800-165603600 Enhancers Primary T helper 17 cells PMA-I stimulated --
26 chr1:165601800-165603600 Enhancers HSMM muscle
27 chr1:165601800-165603800 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr1:165601800-165607400 Enhancers Brain Substantia Nigra brain
29 chr1:165601800-165615200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr1:165602000-165603400 Enhancers Stomach Mucosa stomach
31 chr1:165602000-165603600 Enhancers Hela-S3 cervix
32 chr1:165602000-165604200 Weak transcription Primary B cells from peripheral blood blood
33 chr1:165602000-165604400 Weak transcription Primary T cells fromperipheralblood blood
34 chr1:165602000-165605600 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr1:165602000-165622800 Weak transcription Primary hematopoietic stem cells blood
36 chr1:165602200-165603000 Enhancers Sigmoid Colon Sigmoid Colon
37 chr1:165602200-165603400 Enhancers HUVEC blood vessel
38 chr1:165602200-165603600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:165602200-165603600 Enhancers Primary monocytes fromperipheralblood blood
40 chr1:165602200-165603600 Enhancers NHEK skin
41 chr1:165602200-165603800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:165602200-165603800 Enhancers Colon Smooth Muscle Colon
43 chr1:165602200-165604000 Enhancers K562 blood
44 chr1:165602200-165604000 Flanking Active TSS NHDF-Ad bronchial
45 chr1:165602200-165604600 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr1:165602200-165604600 Enhancers Fetal Adrenal Gland Adrenal Gland
47 chr1:165602200-165604800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:165602200-165605000 Weak transcription Fetal Muscle Trunk muscle
49 chr1:165602200-165605200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:165602200-165606000 Enhancers Brain Anterior Caudate brain

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Last update: Aug 31, 2015