Variant report

Variant	rs34902255
Chromosome Location	chr18:8947190-8947191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8909450..8911261-chr18:8946919..8948987,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10163592	0.84[AFR][1000 genomes]
rs34997876	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56300427	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8084310	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8937600-8948000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:8941800-8948800	Enhancers	NHDF-Ad	bronchial
3	chr18:8943000-8947600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr18:8943200-8947800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr18:8943400-8947600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:8943400-8948200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:8944400-8947600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:8944400-8947800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr18:8944400-8948600	Weak transcription	Stomach Mucosa	stomach
10	chr18:8944600-8947600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr18:8944800-8947600	Weak transcription	Fetal Brain Male	brain
12	chr18:8945200-8947600	Weak transcription	Dnd41	blood
13	chr18:8945400-8947800	Weak transcription	Fetal Thymus	thymus
14	chr18:8945400-8948000	Weak transcription	Primary B cells from cord blood	blood
15	chr18:8945400-8948400	Weak transcription	Brain Germinal Matrix	brain
16	chr18:8945600-8947600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr18:8945600-8947800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr18:8945800-8947800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr18:8945800-8947800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr18:8945800-8947800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr18:8946000-8947600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr18:8946000-8947600	Weak transcription	NH-A	brain
23	chr18:8946400-8947200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr18:8946600-8947200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr18:8946600-8949800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr18:8946800-8947600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr18:8946800-8947800	Weak transcription	Osteobl	bone
28	chr18:8946800-8948000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr18:8946800-8948000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr18:8947000-8947600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr18:8947000-8947600	Weak transcription	NHLF	lung
32	chr18:8947000-8947800	Weak transcription	Muscle Satellite Cultured Cells	--

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