Variant report

Variant	rs34905591
Chromosome Location	chr10:38127550-38127551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38125960..38130211-chr10:38145750..38148095,4	MCF-7	breast:
2	chr10:38123782..38128970-chr10:38145175..38149505,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198105	Chromatin interaction
ENSG00000236514	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11498322	1.00[EUR][1000 genomes]
rs12252533	1.00[EUR][1000 genomes]
rs12252678	1.00[EUR][1000 genomes]
rs12260004	1.00[EUR][1000 genomes]
rs12775243	1.00[EUR][1000 genomes]
rs12782465	1.00[EUR][1000 genomes]
rs28800635	1.00[EUR][1000 genomes]
rs34289403	1.00[EUR][1000 genomes]
rs71489400	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38114000-38128800	ZNF genes & repeats	Liver	Liver
2	chr10:38114400-38130000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
3	chr10:38115600-38129000	ZNF genes & repeats	A549	lung
4	chr10:38115600-38138200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:38115800-38132200	ZNF genes & repeats	Fetal Brain Female	brain
6	chr10:38116000-38128800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:38116200-38127600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr10:38116200-38137800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:38116400-38128400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr10:38116600-38135800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr10:38117200-38129600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:38117400-38129600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:38117400-38131600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr10:38117600-38128800	ZNF genes & repeats	Fetal Lung	lung
15	chr10:38121200-38128200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:38121200-38131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:38121600-38127600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:38121600-38127600	Strong transcription	Stomach Smooth Muscle	stomach
19	chr10:38121600-38128200	Strong transcription	Brain Substantia Nigra	brain
20	chr10:38121800-38129400	Strong transcription	HSMM	muscle
21	chr10:38122200-38128000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:38122200-38128600	Weak transcription	HUVEC	blood vessel
23	chr10:38122200-38134400	Weak transcription	Hela-S3	cervix
24	chr10:38122800-38127600	Strong transcription	Adipose Nuclei	Adipose
25	chr10:38123000-38128000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:38123000-38144400	Weak transcription	NHEK	skin
27	chr10:38123600-38127600	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:38123600-38127800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr10:38123600-38128200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:38123600-38128400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:38123800-38128200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:38123800-38129200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr10:38123800-38129400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr10:38124000-38127800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:38124000-38144400	Weak transcription	NH-A	brain
36	chr10:38124200-38127600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr10:38124200-38128000	Strong transcription	Brain Angular Gyrus	brain
38	chr10:38124200-38128200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr10:38124600-38127800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr10:38124600-38128200	Strong transcription	Left Ventricle	heart
41	chr10:38124600-38129600	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr10:38125000-38127600	Strong transcription	Brain Anterior Caudate	brain
43	chr10:38125200-38128200	Strong transcription	Pancreas	Pancrea
44	chr10:38125200-38128400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr10:38125200-38129800	ZNF genes & repeats	Brain Germinal Matrix	brain
46	chr10:38125200-38144400	Weak transcription	Psoas Muscle	Psoas
47	chr10:38125600-38127600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:38125600-38128000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:38125600-38130000	Strong transcription	Ovary	ovary
50	chr10:38125600-38142800	Weak transcription	NHDF-Ad	bronchial

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