Variant report

Variant	rs34906255
Chromosome Location	chr14:71104786-71104787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12586689	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12586713	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1572678	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34906255	TTC9	cis	Muscle Skeletal	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71092200-71107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:71092200-71107600	Weak transcription	HSMM	muscle
3	chr14:71094600-71107200	Weak transcription	HSMMtube	muscle
4	chr14:71098400-71107200	Weak transcription	Thymus	Thymus
5	chr14:71099000-71107000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:71102000-71107400	Weak transcription	Fetal Brain Female	brain
7	chr14:71102600-71106800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:71103000-71107600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:71103200-71104800	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:71103200-71106200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:71103200-71107000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:71103400-71104800	Enhancers	Primary B cells from cord blood	blood
13	chr14:71104200-71107200	Weak transcription	Spleen	Spleen
14	chr14:71104600-71104800	Enhancers	GM12878-XiMat	blood
15	chr14:71104600-71105400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr14:71104600-71105400	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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