Variant report

Variant	rs34913150
Chromosome Location	chr5:5179745-5179746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr5:5179710-5180224	H1-hESC	embryonic stem cell:	n/a	n/a
2	TCF12	chr5:5179634-5180051	H1-hESC	embryonic stem cell:	n/a	n/a
3	CHD2	chr5:5179736-5180189	H1-hESC	embryonic stem cell:	n/a	n/a
4	HDAC2	chr5:5179669-5180143	H1-hESC	embryonic stem cell:	n/a	n/a
5	TEAD4	chr5:5179631-5180134	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr5:5179655-5180169	H1-hESC	embryonic stem cell:	n/a	chr5:5179825-5179837
7	YY1	chr5:5179680-5180191	H1-hESC	embryonic stem cell:	n/a	chr5:5180170-5180181
8	YY1	chr5:5179665-5180084	H1-hESC	embryonic stem cell:	n/a	n/a
9	TEAD4	chr5:5179623-5180107	H1-hESC	embryonic stem cell:	n/a	n/a
10	SP1	chr5:5179588-5180200	H1-hESC	embryonic stem cell:	n/a	chr5:5179824-5179838
11	MAX	chr5:5179735-5180079	H1-hESC	embryonic stem cell:	n/a	n/a
12	CEBPB	chr5:5179700-5180099	H1-hESC	embryonic stem cell:	n/a	n/a
13	EP300	chr5:5179674-5180162	H1-hESC	embryonic stem cell:	n/a	n/a
14	NANOG	chr5:5179677-5180083	H1-hESC	embryonic stem cell:	n/a	chr5:5179806-5179815 chr5:5179957-5179971
15	BCL11A	chr5:5179736-5180024	H1-hESC	embryonic stem cell:	n/a	chr5:5179865-5179874
16	TCF12	chr5:5179736-5180095	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr5:5179728-5180104	H1-hESC	embryonic stem cell:	n/a	n/a
18	SP1	chr5:5179596-5180072	H1-hESC	embryonic stem cell:	n/a	chr5:5179824-5179838

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:5177669..5180666-chr5:5181916..5184715,2	K562	blood:

Variant related genes	Relation type
ENSG00000250866	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13176907	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13177816	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115006	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115007	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34799694	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021653	chr5:4932992-5201887	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2757980	chr5:4980876-5184615	Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2759318	chr5:4980876-5184615	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv830194	chr5:5002459-5187667	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5176000-5180400	Enhancers	Fetal Kidney	kidney
2	chr5:5176200-5181800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:5176400-5179800	Weak transcription	Pancreas	Pancrea
4	chr5:5177200-5181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:5177600-5183200	Weak transcription	Gastric	stomach
6	chr5:5177600-5185000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:5178200-5181000	Enhancers	NH-A	brain
8	chr5:5178600-5179800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr5:5178800-5180000	Enhancers	A549	lung
10	chr5:5178800-5180400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:5178800-5180600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr5:5179000-5179800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr5:5179000-5179800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr5:5179000-5179800	Weak transcription	Ovary	ovary
15	chr5:5179000-5180400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr5:5179000-5182200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:5179000-5188400	Weak transcription	Liver	Liver
18	chr5:5179200-5179800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr5:5179200-5179800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr5:5179200-5180000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:5179400-5179800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
22	chr5:5179400-5179800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:5179400-5179800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:5179400-5180400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:5179400-5183200	Weak transcription	Fetal Lung	lung
26	chr5:5179600-5179800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links