Variant report

Variant	rs34919214
Chromosome Location	chr11:101791224-101791225
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv469989	chr11:101790671-101857758	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv556140	chr11:101790671-101857758	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101786200-101792000	Weak transcription	Small Intestine	intestine
2	chr11:101786200-101802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:101787000-101801200	Weak transcription	Fetal Stomach	stomach
4	chr11:101787200-101791800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:101787200-101800200	Weak transcription	Fetal Lung	lung
6	chr11:101787200-101802000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:101787200-101820200	Weak transcription	Brain Substantia Nigra	brain
8	chr11:101787400-101798800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:101787400-101799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:101787400-101800200	Weak transcription	Ovary	ovary
11	chr11:101787400-101800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:101787400-101802600	Weak transcription	Brain Angular Gyrus	brain
13	chr11:101787400-101815600	Weak transcription	Adipose Nuclei	Adipose
14	chr11:101787400-101818800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:101787400-101820400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:101787400-101827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:101787400-101839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:101787400-101861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:101787600-101791400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:101787600-101809200	Weak transcription	A549	lung
22	chr11:101788200-101800000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:101788200-101800000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:101788200-101837800	Weak transcription	HUVEC	blood vessel
25	chr11:101788600-101793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:101788600-101800200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:101789000-101800200	Weak transcription	Aorta	Aorta
28	chr11:101789000-101800200	Weak transcription	Brain Anterior Caudate	brain
29	chr11:101789000-101815200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:101790600-101794800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links