Variant report

Variant	rs34921364
Chromosome Location	chr6:30640478-30640479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30572488..30575040-chr6:30638156..30640619,2	K562	blood:
2	chr6:30607674..30610215-chr6:30640154..30642448,2	K562	blood:
3	chr6:30625710..30628621-chr6:30639335..30642067,3	MCF-7	breast:
4	chr6:30634661..30668428-chr6:30680318..30698953,145	MCF-7	breast:
5	chr6:30612907..30616336-chr6:30637849..30642816,6	MCF-7	breast:
6	chr6:30524337..30526594-chr6:30639300..30642011,2	K562	blood:
7	chr6:30619664..30622989-chr6:30637917..30640970,3	MCF-7	breast:
8	chr6:30608479..30611189-chr6:30639611..30641911,2	MCF-7	breast:
9	chr6:30638422..30642374-chr6:30687329..30691225,7	MCF-7	breast:
10	chr6:30639198..30640746-chr6:30685317..30687045,2	MCF-7	breast:
11	chr6:30581230..30587315-chr6:30638443..30644329,12	MCF-7	breast:
12	chr6:30577127..30589352-chr6:30620628..30648657,88	K562	blood:
13	chr6:30457060..30459448-chr6:30640175..30642005,2	K562	blood:
14	chr6:30579823..30587267-chr6:30636296..30642513,15	MCF-7	breast:
15	chr6:30594510..30596301-chr6:30639461..30642198,2	MCF-7	breast:
16	chr6:30639079..30642784-chr6:30705636..30712325,12	MCF-7	breast:
17	chr2:88315259..88316217-chr6:30640403..30641347,2	Hela-S3	cervix:
18	chr6:30523729..30526402-chr6:30638868..30641840,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000204568	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000204590	Chromatin interaction
ENSG00000137343	Chromatin interaction
ENSG00000222724	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000272540	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000196230	Chromatin interaction
ENSG00000204560	Chromatin interaction
ENSG00000204576	Chromatin interaction
ENSG00000204592	Chromatin interaction
ENSG00000204564	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000137337	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11751264	1.00[EUR][1000 genomes]
rs11752619	1.00[EUR][1000 genomes]
rs11754451	1.00[EUR][1000 genomes]
rs11755019	1.00[EUR][1000 genomes]
rs11755197	1.00[EUR][1000 genomes]
rs11756784	1.00[EUR][1000 genomes]
rs11757794	1.00[EUR][1000 genomes]
rs11759009	1.00[EUR][1000 genomes]
rs11759135	1.00[EUR][1000 genomes]
rs11759186	1.00[EUR][1000 genomes]
rs34127083	1.00[EUR][1000 genomes]
rs61743771	0.81[AFR][1000 genomes]
rs7774485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
5	nsv884086	chr6:30462084-30672757	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	798 gene(s)	inside rSNPs	diseases
6	nsv830626	chr6:30558064-30732905	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	406 gene(s)	inside rSNPs	diseases
7	nsv884094	chr6:30637998-30660611	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	nsv823472	chr6:30638581-30644218	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30639000-30641000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:30639200-30641600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:30639600-30640600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr6:30639600-30640600	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr6:30639600-30641000	Active TSS	HSMM	muscle
6	chr6:30639600-30641000	Active TSS	HSMMtube	muscle
7	chr6:30639600-30641200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:30639600-30641200	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:30639600-30641200	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:30639600-30641200	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:30639600-30641200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:30639600-30641200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr6:30639600-30641200	Active TSS	A549	lung
14	chr6:30639800-30640600	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr6:30639800-30640600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr6:30639800-30640600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:30639800-30640800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:30639800-30640800	Active TSS	NHDF-Ad	bronchial
19	chr6:30639800-30641000	Active TSS	H1 Cell Line	embryonic stem cell
20	chr6:30639800-30641000	Active TSS	H9 Cell Line	embryonic stem cell
21	chr6:30639800-30641000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:30639800-30641000	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr6:30639800-30641000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:30639800-30641000	Active TSS	Right Ventricle	heart
25	chr6:30639800-30641000	Active TSS	Hela-S3	cervix
26	chr6:30639800-30641000	Active TSS	NHLF	lung
27	chr6:30639800-30641200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:30639800-30641200	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr6:30639800-30641200	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:30639800-30641200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:30639800-30641200	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr6:30639800-30641200	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr6:30639800-30641200	Active TSS	Fetal Kidney	kidney
34	chr6:30639800-30641200	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr6:30639800-30641200	Active TSS	HMEC	breast
36	chr6:30640000-30640600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:30640000-30640800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr6:30640000-30640800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:30640000-30640800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:30640000-30640800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:30640000-30640800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:30640000-30640800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:30640000-30640800	Active TSS	Aorta	Aorta
44	chr6:30640000-30640800	Active TSS	Esophagus	oesophagus
45	chr6:30640000-30640800	Active TSS	Gastric	stomach
46	chr6:30640000-30640800	Active TSS	Lung	lung
47	chr6:30640000-30640800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr6:30640000-30640800	Active TSS	Small Intestine	intestine
49	chr6:30640000-30640800	Bivalent/Poised TSS	HepG2	liver
50	chr6:30640000-30641000	Active TSS	Breast Myoepithelial Primary Cells	Breast

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