Variant report

Variant	rs34927290
Chromosome Location	chr1:174854110-174854111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:174852808..174855658-chr1:174858016..174861315,3	K562	blood:
2	chr1:174853436..174856434-chr1:174966975..174969416,3	MCF-7	breast:
3	chr1:174848617..174850871-chr1:174852558..174855348,2	K562	blood:
4	chr1:174851054..174854468-chr1:174967106..174970094,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116161	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11802691	1.00[CHD][hapmap]
rs12041631	1.00[LWK][hapmap]
rs12125988	1.00[CHD][hapmap]
rs16847812	1.00[LWK][hapmap]
rs1970756	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174844000-174855200	Weak transcription	Right Atrium	heart
2	chr1:174844800-174871600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:174844800-174874400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:174844800-174877400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:174845000-174856200	Weak transcription	Primary B cells from cord blood	blood
6	chr1:174845000-174862800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:174845000-174863000	Weak transcription	Primary T cells from cord blood	blood
8	chr1:174845200-174862600	Weak transcription	Liver	Liver
9	chr1:174846200-174861200	Weak transcription	GM12878-XiMat	blood
10	chr1:174846600-174862800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:174846800-174855200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:174846800-174855200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:174846800-174861000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:174846800-174874000	Weak transcription	Ovary	ovary
15	chr1:174847000-174855400	Weak transcription	Colonic Mucosa	Colon
16	chr1:174847000-174869200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:174847400-174862800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:174847400-174863000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:174847400-174864400	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr1:174847400-174864600	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr1:174847400-174864600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:174847600-174874400	Weak transcription	Esophagus	oesophagus
23	chr1:174849200-174858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:174849200-174864400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:174849600-174864400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:174850200-174855400	Weak transcription	Fetal Intestine Large	intestine
27	chr1:174850200-174861200	Weak transcription	Pancreas	Pancrea
28	chr1:174850200-174874800	Weak transcription	Fetal Stomach	stomach
29	chr1:174850400-174856000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:174850400-174869600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:174852000-174873400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:174852400-174854200	Enhancers	Fetal Heart	heart
33	chr1:174852400-174854200	Enhancers	Stomach Mucosa	stomach
34	chr1:174852600-174854200	Enhancers	Brain Hippocampus Middle	brain
35	chr1:174852600-174854400	Enhancers	Fetal Lung	lung
36	chr1:174852600-174856800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr1:174852800-174859000	Weak transcription	Gastric	stomach
38	chr1:174852800-174860600	Weak transcription	Left Ventricle	heart
39	chr1:174852800-174864000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr1:174852800-174874800	Weak transcription	Spleen	Spleen
41	chr1:174853000-174855200	Weak transcription	Small Intestine	intestine
42	chr1:174853000-174858800	Weak transcription	K562	blood
43	chr1:174853000-174859000	Weak transcription	HepG2	liver
44	chr1:174853400-174855200	Weak transcription	Fetal Intestine Small	intestine
45	chr1:174853400-174855400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr1:174853400-174857400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr1:174853400-174865000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr1:174853400-174870200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr1:174853800-174854800	Enhancers	Fetal Brain Male	brain
50	chr1:174854000-174854200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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