Variant report

Variant	rs34932841
Chromosome Location	chr3:43395680-43395681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43395114-43396768	HUVEC	blood vessel:	n/a	n/a
2	CEBPB	chr3:43395467-43395946	HepG2	liver:	n/a	chr3:43395673-43395684 chr3:43395652-43395663
3	CEBPB	chr3:43395457-43395815	HepG2	liver:	n/a	chr3:43395673-43395684 chr3:43395652-43395663
4	POLR2A	chr3:43395011-43396918	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr3:43395395-43396018	HepG2	liver:	n/a	n/a
6	POLR2A	chr3:43395440-43396756	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr3:43395528-43395819	Hela-S3	cervix:	n/a	chr3:43395673-43395684 chr3:43395652-43395663
8	POLR2A	chr3:43395352-43395849	K562	blood:	n/a	n/a
9	POLR2A	chr3:43395206-43396682	HUVEC	blood vessel:	n/a	n/a
10	CEBPD	chr3:43395481-43395799	HepG2	liver:	n/a	n/a
11	CEBPB	chr3:43395549-43395821	IMR90	lung:	n/a	chr3:43395673-43395684 chr3:43395652-43395663
12	CEBPB	chr3:43395504-43395767	HepG2	liver:	n/a	chr3:43395673-43395684 chr3:43395652-43395663
13	POLR2A	chr3:43395554-43396134	GM12878	blood:	n/a	n/a
14	SMC3	chr3:43395500-43395781	HepG2	liver:	n/a	n/a
15	POLR2A	chr3:43395385-43395796	H1-neurons	neurons:	n/a	n/a
16	CEBPB	chr3:43395425-43395775	HepG2	liver:	n/a	chr3:43395673-43395684 chr3:43395652-43395663
17	POLR2A	chr3:43394957-43396955	HUVEC	blood vessel:	n/a	n/a
18	CEBPB	chr3:43395524-43395809	A549	lung:	n/a	chr3:43395673-43395684 chr3:43395652-43395663

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43390162..43392791-chr3:43393918..43397440,3	K562	blood:
2	chr3:43388465..43391371-chr3:43394081..43396084,2	MCF-7	breast:

Variant related genes	Relation type
SNRK-AS1	TF binding region
ENSG00000271941	Chromatin interaction

rs_ID	r²[population]
rs13076840	1.00[AMR][1000 genomes]
rs13087059	1.00[AMR][1000 genomes]
rs35914971	1.00[AMR][1000 genomes]

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
2	chr3:43385200-43396800	Weak transcription	Ovary	ovary
3	chr3:43385800-43402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:43387600-43402600	Weak transcription	Right Atrium	heart
5	chr3:43389200-43400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:43390600-43403600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:43390600-43407200	Weak transcription	Gastric	stomach
9	chr3:43390800-43402200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:43390800-43405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:43391400-43405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:43391600-43396000	Weak transcription	Spleen	Spleen
13	chr3:43391600-43402000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:43391600-43404200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
16	chr3:43392200-43395800	Weak transcription	HepG2	liver
17	chr3:43392200-43396600	Weak transcription	HSMMtube	muscle
18	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:43392400-43396400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:43392600-43397000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:43392800-43402200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:43393000-43396000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:43393000-43402000	Weak transcription	Left Ventricle	heart
24	chr3:43393000-43405000	Weak transcription	Pancreas	Pancrea
25	chr3:43393200-43396000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr3:43393200-43396000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:43393200-43396200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
28	chr3:43393400-43396600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
29	chr3:43393400-43402200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:43394000-43396000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr3:43395000-43396200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
32	chr3:43395000-43396400	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr3:43395000-43396600	ZNF genes & repeats	Adipose Nuclei	Adipose
34	chr3:43395000-43396600	Enhancers	Liver	Liver
35	chr3:43395200-43395800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:43395200-43395800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:43395200-43396000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:43395200-43396000	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr3:43395200-43396200	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr3:43395200-43396200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
41	chr3:43395200-43396600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:43395200-43396600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr3:43395200-43396600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
44	chr3:43395200-43396600	ZNF genes & repeats	Fetal Stomach	stomach
45	chr3:43395200-43396800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:43395200-43396800	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr3:43395200-43396800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
48	chr3:43395200-43396800	ZNF genes & repeats	Aorta	Aorta
49	chr3:43395200-43396800	ZNF genes & repeats	Fetal Thymus	thymus
50	chr3:43395200-43396800	ZNF genes & repeats	Thymus	Thymus

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