Variant report
| Variant | rs34935378 |
|---|---|
| Chromosome Location | chr3:103770866-103770867 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10510502 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1587978 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs17006956 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17007057 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17007063 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1827850 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2365900 | 0.82[ASN][1000 genomes] |
| rs57344311 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59264312 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs60773738 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs610310 | 0.82[ASN][1000 genomes] |
| rs61526106 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs617621 | 0.81[ASN][1000 genomes] |
| rs627631 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6550523 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6550524 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs680836 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6808521 | 0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6808851 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6808959 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948426 | chr3:103046716-103952548 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv949251 | chr3:103046716-103977037 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv527886 | chr3:103048891-103989893 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv877271 | chr3:103684644-103795249 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv10297 | chr3:103721772-104050133 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:103767200-103772200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr3:103770200-103772000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
