Variant report

Variant	rs34936152
Chromosome Location	chr4:106818911-106818912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:106818786-106818918	MCF10A-Er-Src	breast:	n/a	n/a
2	RUNX3	chr4:106818501-106818970	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106817938..106820838-chr4:106829455..106833276,3	MCF-7	breast:

Variant related genes	Relation type
INTS12	TF binding region
NPNT	TF binding region
ENSG00000168743	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17036366	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106815800-106819200	Active TSS	Aorta	Aorta
2	chr4:106817000-106819200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106817000-106819200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
4	chr4:106818000-106819000	Weak transcription	Pancreas	Pancrea
5	chr4:106818000-106819200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr4:106818000-106819400	Bivalent Enhancer	HepG2	liver
7	chr4:106818000-106824400	Weak transcription	Small Intestine	intestine
8	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
9	chr4:106818200-106819400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:106818200-106819400	Enhancers	Duodenum Mucosa	Duodenum
11	chr4:106818200-106819400	Enhancers	Hela-S3	cervix
12	chr4:106818200-106819400	Enhancers	NHEK	skin
13	chr4:106818200-106820200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr4:106818200-106830400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:106818400-106819400	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr4:106818400-106819600	Enhancers	Fetal Heart	heart
17	chr4:106818600-106819000	Enhancers	GM12878-XiMat	blood
18	chr4:106818600-106819200	Active TSS	HSMMtube	muscle
19	chr4:106818800-106819000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:106818800-106819000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr4:106818800-106819200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:106818800-106819400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:106818800-106819400	Flanking Active TSS	Fetal Intestine Small	intestine

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