Variant report

Variant	rs34948391
Chromosome Location	chrX:63876971-63876972
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10465043	0.97[EUR][1000 genomes]
rs10738307	0.97[EUR][1000 genomes]
rs13289590	0.83[AMR][1000 genomes]
rs13289610	0.83[AMR][1000 genomes]
rs13290445	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13291242	1.00[AMR][1000 genomes]
rs13291883	0.83[AMR][1000 genomes]
rs13296015	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1412298	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34668426	1.00[AMR][1000 genomes]
rs35205602	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35380238	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35659791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35803051	0.83[AMR][1000 genomes]
rs36076364	1.00[AMR][1000 genomes]
rs4740537	0.97[EUR][1000 genomes]
rs4741259	0.83[EUR][1000 genomes]
rs4741264	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71474400	0.83[AMR][1000 genomes]
rs71507349	0.83[AMR][1000 genomes]
rs71507352	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71507353	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71507354	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7855889	0.97[EUR][1000 genomes]
rs7856120	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532864	chrX:63365254-64125810	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2756772	chrX:63509553-64136689	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	esv2758870	chrX:63509553-64136689	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv2830378	chrX:63523802-64234414	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	esv2758572	chrX:63538799-63883277	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv11983	chrX:63871455-63881383	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:63876400-63877200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chrX:63876400-63877600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:63876800-63877800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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