Variant report

Variant	rs349507
Chromosome Location	chr3:140218207-140218208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139656623..139657234-chr3:140218062..140218601,2	MCF-7	breast:
2	chr3:139878941..139879664-chr3:140217683..140218605,2	MCF-7	breast:
3	chr3:140078397..140079800-chr3:140217706..140218666,5	MCF-7	breast:
4	chr3:139654619..139655608-chr3:140217733..140218478,2	MCF-7	breast:
5	chr3:140210197..140213712-chr3:140216461..140219410,4	K562	blood:
6	chr3:139995231..139996152-chr3:140217882..140218446,3	MCF-7	breast:
7	chr3:139847138..139847725-chr3:140217975..140218617,3	MCF-7	breast:
8	chr2:44983770..44984578-chr3:140217800..140218609,2	MCF-7	breast:
9	chr3:139995393..139996114-chr3:140217863..140218578,2	MCF-7	breast:
10	chr3:140078938..140079524-chr3:140218046..140218560,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs168386	0.82[EUR][1000 genomes]
rs349504	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs349505	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs349510	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs349533	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs349534	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs349542	0.84[CHB][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs524554	0.92[CEU][hapmap];0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs530046	0.89[CEU][hapmap];0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs563342	0.92[CEU][hapmap];0.95[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv591863	chr3:140126067-140274442	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140192200-140219800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:140212400-140219800	Weak transcription	HSMMtube	muscle
3	chr3:140216400-140227600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:140216600-140220200	Weak transcription	Right Atrium	heart
5	chr3:140218000-140227800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:140218200-140218400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:140218200-140218400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:140218200-140218400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:140218200-140218400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:140218200-140218600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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