Variant report
| Variant | rs34954459 |
|---|---|
| Chromosome Location | chr7:26279349-26279350 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:26272249..26274345-chr7:26278548..26281034,2 | MCF-7 | breast: | |
| 2 | chr7:26191194..26193333-chr7:26277861..26280207,2 | K562 | blood: | |
| 3 | chr7:26273432..26276921-chr7:26278671..26281844,3 | K562 | blood: | |
| 4 | chr7:26224474..26226618-chr7:26279282..26281350,3 | MCF-7 | breast: | |
| 5 | chr7:26239072..26242746-chr7:26278698..26281751,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000122565 | Chromatin interaction |
| ENSG00000050344 | Chromatin interaction |
| ENSG00000122566 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10230838 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10265394 | 0.85[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10275247 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12113404 | 0.84[AMR][1000 genomes] |
| rs12669140 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12672942 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2115547 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2391265 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3757667 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3757668 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6461920 | 0.82[AMR][1000 genomes] |
| rs67976730 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7798786 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021308 | chr7:26116605-26419720 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 166 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018971 | chr7:26161228-26380361 | Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| 3 | esv1821097 | chr7:26243108-26303403 | Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
