Variant report

Variant	rs34957364
Chromosome Location	chr14:65519169-65519170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65516810..65519484-chr14:65534795..65537184,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAB15-1	chr14:65518601-65520344	ENSG00000249059

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11628273	0.83[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34957364	ATP6V1D	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65464400-65521200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:65483400-65528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:65493000-65521400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:65496800-65521200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
8	chr14:65502000-65521200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:65502400-65523400	Weak transcription	Right Atrium	heart
10	chr14:65508200-65530800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr14:65508400-65521200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:65508400-65527800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:65508400-65527800	Weak transcription	Colonic Mucosa	Colon
14	chr14:65508400-65528000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr14:65508600-65530800	Weak transcription	NHDF-Ad	bronchial
16	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:65508800-65521400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:65509400-65521000	Weak transcription	NHLF	lung
19	chr14:65509600-65528000	Weak transcription	Fetal Kidney	kidney
20	chr14:65510000-65521200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:65510200-65519200	Weak transcription	Brain Angular Gyrus	brain
22	chr14:65510200-65521000	Weak transcription	A549	lung
23	chr14:65510200-65527800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr14:65511400-65519600	Weak transcription	Esophagus	oesophagus
25	chr14:65511400-65519600	Weak transcription	Dnd41	blood
26	chr14:65511400-65521000	Weak transcription	HSMMtube	muscle
27	chr14:65511400-65521200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr14:65511600-65519600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:65511600-65519600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:65511600-65519600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:65511600-65519600	Weak transcription	Gastric	stomach
32	chr14:65511600-65519600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr14:65511600-65519800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:65511600-65519800	Weak transcription	Placenta	Placenta
35	chr14:65511600-65519800	Weak transcription	Lung	lung
36	chr14:65511600-65519800	Weak transcription	Ovary	ovary
37	chr14:65511600-65521200	Weak transcription	Brain Substantia Nigra	brain
38	chr14:65511600-65521200	Weak transcription	Pancreas	Pancrea
39	chr14:65511600-65521400	Weak transcription	Osteobl	bone
40	chr14:65511600-65528600	Weak transcription	NH-A	brain
41	chr14:65511800-65527800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr14:65512000-65519600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:65512000-65519600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:65512000-65519600	Weak transcription	Aorta	Aorta
45	chr14:65512000-65519600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr14:65512000-65519800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:65512000-65519800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr14:65512000-65519800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr14:65512000-65521000	Weak transcription	Spleen	Spleen
50	chr14:65512000-65521200	Weak transcription	Primary B cells from cord blood	blood

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