Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:146837603..146838491-chr3:146909373..146910222,2	MCF-7	breast:
2	chr3:146465618..146466350-chr3:146909313..146909963,2	MCF-7	breast:
3	chr3:146535974..146536861-chr3:146909343..146910183,2	MCF-7	breast:
4	chr3:146358593..146359753-chr3:146909192..146910187,4	MCF-7	breast:
5	chr3:146535264..146535780-chr3:146909367..146910281,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13061188	1.00[ASN][1000 genomes]
rs13071717	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074767	1.00[ASN][1000 genomes]
rs13084146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2018627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102158	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34047144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34060776	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34303776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34919642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728944	1.00[ASN][1000 genomes]
rs60970520	1.00[ASN][1000 genomes]
rs61693575	0.81[EUR][1000 genomes]
rs6786710	0.81[EUR][1000 genomes]
rs71302434	1.00[ASN][1000 genomes]
rs71302436	1.00[ASN][1000 genomes]
rs71302439	1.00[ASN][1000 genomes]
rs71302441	1.00[ASN][1000 genomes]
rs71302442	1.00[ASN][1000 genomes]
rs71302449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71302455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385588	chr3:146782324-147083081	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1005299	chr3:146794991-146953727	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv460883	chr3:146889655-146960105	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv591966	chr3:146889655-146960105	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv591967	chr3:146889655-146964828	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146907200-146912400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:146907600-146912600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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