Variant report

Variant	rs34974390
Chromosome Location	chr2:205234494-205234495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12997752	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13005270	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13035221	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34361383	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71427742	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875721	chr2:205232072-205306024	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205229800-205238600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:205230200-205234800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:205231200-205234600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:205233200-205234800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:205233400-205234600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:205233600-205236800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:205233800-205235200	Enhancers	Brain Germinal Matrix	brain
8	chr2:205234000-205235600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:205234200-205235000	Weak transcription	Fetal Kidney	kidney
10	chr2:205234200-205235800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:205234400-205235400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:205234400-205235400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:205234400-205235400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:205234400-205235400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:205234400-205235400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:205234400-205235400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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