Variant report

Variant	rs34979379
Chromosome Location	chr4:95310305-95310306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10033087	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10033157	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11097422	0.83[AMR][1000 genomes]
rs11097423	0.80[AMR][1000 genomes]
rs11097426	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11721714	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11726709	0.82[AMR][1000 genomes]
rs11726734	0.80[AMR][1000 genomes]
rs11734880	0.82[AMR][1000 genomes]
rs12511686	0.83[ASN][1000 genomes]
rs13126976	0.80[AMR][1000 genomes]
rs13134502	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1529339	0.81[AMR][1000 genomes]
rs1609423	0.81[AMR][1000 genomes]
rs1968333	0.82[AMR][1000 genomes]
rs28458965	0.80[AMR][1000 genomes]
rs62321981	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6825431	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6826736	0.81[AMR][1000 genomes]
rs6847590	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6853674	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7658390	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95308600-95311800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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