Variant report

Variant	rs34984882
Chromosome Location	chr1:160808796-160808797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITLN1-1	chr1:160808610-160808955	NONHSAT007080

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10158850	1.00[ASN][1000 genomes]
rs12061248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067762	0.97[ASN][1000 genomes]
rs12078336	0.97[ASN][1000 genomes]
rs12354234	1.00[ASN][1000 genomes]
rs12738298	0.81[ASN][1000 genomes]
rs1412848	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832445	0.97[ASN][1000 genomes]
rs2280416	0.97[ASN][1000 genomes]
rs3766381	1.00[ASN][1000 genomes]
rs55653503	1.00[ASN][1000 genomes]
rs55709726	1.00[ASN][1000 genomes]
rs56337978	1.00[ASN][1000 genomes]
rs60719109	1.00[EUR][1000 genomes]
rs61228387	1.00[EUR][1000 genomes]
rs6696695	1.00[ASN][1000 genomes]
rs7551159	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160793000-160811600	Weak transcription	Gastric	stomach
2	chr1:160803200-160812400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:160803600-160810000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:160804800-160809600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:160805000-160809200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:160805000-160809400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr1:160805200-160809000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:160805600-160809000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:160805600-160809000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:160805600-160809200	Enhancers	Primary B cells from cord blood	blood
11	chr1:160805600-160809200	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:160806000-160809000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:160806600-160810800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:160806800-160809800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:160807200-160809000	Flanking Active TSS	Thymus	Thymus
16	chr1:160807200-160811000	Weak transcription	Fetal Intestine Large	intestine
17	chr1:160807400-160808800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:160807400-160809000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:160807600-160808800	Genic enhancers	Primary monocytes fromperipheralblood	blood
20	chr1:160807600-160808800	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr1:160807600-160808800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr1:160807600-160809000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr1:160807600-160809000	Flanking Active TSS	Dnd41	blood
24	chr1:160807800-160809200	Genic enhancers	Monocytes-CD14+_RO01746	blood
25	chr1:160807800-160809400	Weak transcription	Adipose Nuclei	Adipose
26	chr1:160808000-160809000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
27	chr1:160808000-160809000	Flanking Active TSS	Fetal Thymus	thymus
28	chr1:160808000-160809000	Enhancers	GM12878-XiMat	blood
29	chr1:160808000-160809800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr1:160808200-160809000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr1:160808200-160809200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:160808200-160811800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:160808200-160812200	Weak transcription	Fetal Heart	heart
34	chr1:160808400-160808800	Enhancers	Esophagus	oesophagus
35	chr1:160808400-160808800	Bivalent Enhancer	HSMMtube	muscle
36	chr1:160808400-160809000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr1:160808400-160809000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr1:160808400-160809000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr1:160808400-160810400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr1:160808400-160811000	Weak transcription	Fetal Intestine Small	intestine
41	chr1:160808600-160809000	Genic enhancers	Spleen	Spleen
42	chr1:160808600-160810600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr1:160808600-160811000	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr1:160808600-160811000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr1:160808600-160812600	Genic enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links