Variant report

Variant	rs34998630
Chromosome Location	chr6:144773913-144773914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73780574	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144740800-144787600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:144743000-144780200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr6:144755400-144781200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:144755600-144780800	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
7	chr6:144756800-144777200	Strong transcription	HSMM	muscle
8	chr6:144756800-144780200	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:144762200-144780400	Weak transcription	Psoas Muscle	Psoas
10	chr6:144762800-144780000	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:144762800-144788200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:144762800-144790800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:144762800-144791400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:144763000-144780000	Weak transcription	Brain Substantia Nigra	brain
15	chr6:144763000-144790800	Strong transcription	Primary B cells from cord blood	blood
16	chr6:144763000-144813800	Weak transcription	Brain Anterior Caudate	brain
17	chr6:144763200-144781800	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:144763200-144783000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:144763200-144790800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr6:144763200-144793600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:144763800-144778400	Strong transcription	Primary hematopoietic stem cells	blood
22	chr6:144763800-144780000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:144764000-144780000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:144764000-144781400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:144764000-144790200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:144764200-144784200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:144764200-144788000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:144764200-144788200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:144764400-144838800	Weak transcription	A549	lung
30	chr6:144764600-144777200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:144765200-144781400	Strong transcription	HepG2	liver
32	chr6:144765400-144774400	Strong transcription	Primary T cells from cord blood	blood
33	chr6:144767400-144774000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:144768200-144775000	Strong transcription	Fetal Muscle Leg	muscle
35	chr6:144768400-144776200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:144768600-144777000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:144769000-144780400	Weak transcription	HMEC	breast
38	chr6:144769000-144787800	Weak transcription	NHEK	skin
39	chr6:144769400-144774200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:144770000-144780000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:144770400-144774000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:144771200-144780000	Weak transcription	Colonic Mucosa	Colon
43	chr6:144771200-144781400	Weak transcription	Fetal Heart	heart
44	chr6:144771400-144774000	Strong transcription	Left Ventricle	heart
45	chr6:144771400-144779000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:144771400-144780000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:144771400-144815800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:144771600-144775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:144771600-144778400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:144771600-144779400	Weak transcription	Right Ventricle	heart

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