Variant report

Variant	rs34998867
Chromosome Location	chr8:52605831-52605832
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52599489..52601349-chr8:52604445..52607376,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10091454	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10106091	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10109862	0.84[EUR][1000 genomes]
rs10958296	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13270001	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13277004	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16916741	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28434088	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28512421	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28616568	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2976209	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34342438	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35195931	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36075262	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4326377	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4400372	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873201	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4873572	0.87[EUR][1000 genomes]
rs4873575	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4873584	0.81[EUR][1000 genomes]
rs55701628	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6981260	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6986571	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6986605	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6999693	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7007671	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7011666	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643788	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv831313	chr8:52458835-52638968	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv890898	chr8:52579964-52680933	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52601800-52606000	Weak transcription	Left Ventricle	heart
2	chr8:52601800-52606000	Weak transcription	Right Atrium	heart
3	chr8:52601800-52609000	Weak transcription	Right Ventricle	heart
4	chr8:52604200-52606400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:52604800-52606000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:52605000-52606200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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