Variant report

Variant	rs35003472
Chromosome Location	chr7:150727754-150727755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10255526	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2069456	0.81[AFR][1000 genomes]
rs2303925	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4148850	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4148852	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4148853	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7797143	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
6	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv889471	chr7:150700946-150751590	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv526410	chr7:150714812-150775306	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150726000-150730000	Weak transcription	Gastric	stomach
2	chr7:150726200-150728400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:150726200-150731800	Weak transcription	Aorta	Aorta
4	chr7:150726200-150735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:150726400-150728200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:150726400-150728200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:150726400-150728200	Enhancers	Placenta	Placenta
8	chr7:150726400-150728400	Weak transcription	Right Ventricle	heart
9	chr7:150726400-150728800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:150726400-150729000	Weak transcription	Fetal Intestine Large	intestine
11	chr7:150726400-150729800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:150726400-150729800	Weak transcription	Spleen	Spleen
13	chr7:150726400-150730000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:150726400-150730000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:150726400-150730000	Weak transcription	Ovary	ovary
16	chr7:150726400-150730600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:150726400-150731400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:150726400-150731400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:150726400-150731600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:150726400-150731600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:150726400-150731800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr7:150726400-150732000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:150726400-150735800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:150726400-150736600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:150726400-150743600	Weak transcription	Fetal Kidney	kidney
26	chr7:150726400-150744200	Weak transcription	Right Atrium	heart
27	chr7:150726400-150745000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr7:150726600-150728000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:150726600-150728000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:150726600-150728000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:150726600-150728000	Weak transcription	NHEK	skin
32	chr7:150726600-150728400	Weak transcription	Brain Angular Gyrus	brain
33	chr7:150726600-150728400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:150726600-150728800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:150726600-150729200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:150726600-150729200	Weak transcription	Fetal Brain Female	brain
37	chr7:150726600-150729200	Weak transcription	Thymus	Thymus
38	chr7:150726600-150729800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr7:150726600-150730000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:150726600-150730200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:150726600-150730200	Weak transcription	NHLF	lung
42	chr7:150726600-150730400	Weak transcription	Adipose Nuclei	Adipose
43	chr7:150726600-150730400	Weak transcription	Colonic Mucosa	Colon
44	chr7:150726600-150731000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:150726600-150731000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr7:150726600-150731400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:150726600-150731400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:150726600-150731400	Weak transcription	HSMMtube	muscle
49	chr7:150726600-150731800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr7:150726600-150731800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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