Variant report

Variant	rs35003563
Chromosome Location	chr17:19989218-19989219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:19989186-19989236	NH-A	brain:	n/a
2	chr17:19989186-19989236	HL-60	blood:	n/a
3	chr17:19989186-19989236	HCF	heart:	n/a
4	chr17:19989186-19989236	NHDF-neo	bronchial:	n/a
5	chr17:19989186-19989236	HRCEpiC	kidney:	n/a
6	chr17:19989186-19989236	SK-N-SH_RA	brain:	n/a
7	chr17:19989186-19989236	GM12878	blood:	n/a
8	chr17:19989186-19989236	ovcar-3	ovarian:	n/a
9	chr17:19989186-19989236	RPTEC	kidney:	n/a
10	chr17:19989186-19989236	ProgFib	skin:	n/a
11	chr17:19989186-19989236	K562	blood:	n/a
12	chr17:19989186-19989236	HMEC	breast:	n/a
13	chr17:19989186-19989236	HUVEC	blood vessel:	n/a
14	chr17:19989186-19989236	PANC-1	pancreas:	n/a
15	chr17:19989186-19989236	ECC-1	luminal epithelium:	n/a
16	chr17:19989186-19989236	IMR90	lung:	fetal
17	chr17:19989186-19989236	HIPEpiC	eye:	n/a
18	chr17:19989186-19989236	NHBE	bronchial:	n/a
19	chr17:19989186-19989236	BJ	skin:	n/a
20	chr17:19989186-19989236	HAEpiC	amniotic membrane:	n/a
21	chr17:19989186-19989236	SK-N-MC	brain:	n/a
22	chr17:19989186-19989236	H1-hESC	embryonic stem cell:	embryo
23	chr17:19989186-19989236	HPAEpiC	pulmonary alveolar:	n/a
24	chr17:19989186-19989236	AG09319	gingival:	n/a
25	chr17:19989186-19989236	CMK	blood:	n/a
26	chr17:19989186-19989236	PrEC	prostate:	n/a
27	chr17:19989186-19989236	A549	lung:	n/a
28	chr17:19989186-19989236	HRE	kidney:	n/a
29	chr17:19989186-19989236	PFSK-1	brain:	n/a
30	chr17:19989186-19989236	GM12892	blood:	n/a
31	chr17:19989186-19989236	SAEC	small airway:	n/a
32	chr17:19989186-19989236	Hela-S3	cervix:	n/a
33	chr17:19989186-19989236	GM19239	blood:	n/a
34	chr17:19989186-19989236	AoSMC	blood vessel:	n/a
35	chr17:19989186-19989236	Hepatocyte	liver:	n/a
36	chr17:19989186-19989236	SK-N-SH	brain:	n/a
37	chr17:19989186-19989236	HRPEpiC	eye:	n/a
38	chr17:19989186-19989236	HCM	heart:	n/a
39	chr17:19989186-19989236	NB4	blood:	n/a
40	chr17:19989186-19989236	GM12891	blood:	n/a
41	chr17:19989186-19989236	SKMC	muscle:	n/a
42	chr17:19989186-19989236	HCPEpiC	choroid plexus:	n/a
43	chr17:19989186-19989236	AG10803	skin:	n/a
44	chr17:19989186-19989236	HCT-116	colon:	n/a
45	chr17:19989186-19989236	MCF-7	breast:	n/a
46	chr17:19989186-19989236	AG04449	skin:	fetal
47	chr17:19989186-19989236	AG09309	skin:	n/a
48	chr17:19989186-19989236	AG04450	lung:	fetal
49	chr17:19989186-19989236	NT2-D1	testis:	n/a
50	chr17:19989186-19989236	LNCaP	prostate:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19880813..19883681-chr17:19988880..19990706,2	MCF-7	breast:

No data

Variant related genes	Relation type
SPECC1	CpG island
ENSG00000108599	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10083856	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1034904	0.81[AMR][1000 genomes]
rs10491107	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs11867585	1.00[CEU][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11868084	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11868116	0.83[EUR][1000 genomes]
rs11869616	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11870111	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11871651	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs119672	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs12603372	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs12936443	0.83[EUR][1000 genomes]
rs12942179	0.88[CEU][hapmap]
rs1479129	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs1638525	0.86[CHB][hapmap]
rs169412	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs16960697	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs175922	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs1859407	0.81[EUR][1000 genomes]
rs1860302	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2013443	0.83[EUR][1000 genomes]
rs203450	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs203457	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs203458	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs203460	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs203462	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs203465	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs203466	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs203477	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs203479	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs203481	0.94[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap]
rs2042046	0.85[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs2107565	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs2108978	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs2108980	0.81[AMR][1000 genomes]
rs2189709	0.81[EUR][1000 genomes]
rs2526463	0.81[EUR][1000 genomes]
rs2526466	0.85[GIH][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs2526476	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs2526477	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs2526478	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs2703771	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs2703776	0.85[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs2703795	0.81[EUR][1000 genomes]
rs2703800	0.83[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs2703805	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs2703807	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs2703814	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs28603224	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28637614	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28666381	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28807825	0.83[AMR][1000 genomes]
rs34290687	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35313716	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36077949	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862152	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3888318	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3909258	0.83[AMR][1000 genomes]
rs397969	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs4005937	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4267380	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4479309	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4570919	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4924801	0.81[AMR][1000 genomes]
rs4924803	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924806	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4925060	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs4925065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs4925066	0.81[AMR][1000 genomes]
rs4925067	0.81[AMR][1000 genomes]
rs4925069	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4925072	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4925073	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4925077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4925079	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4925081	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4925085	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4925086	0.83[EUR][1000 genomes]
rs4925087	0.83[EUR][1000 genomes]
rs4925090	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs4925091	0.81[EUR][1000 genomes]
rs55705283	0.83[EUR][1000 genomes]
rs62066865	0.83[EUR][1000 genomes]
rs62066870	0.81[EUR][1000 genomes]
rs62067555	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6587219	0.83[EUR][1000 genomes]
rs7207625	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7208025	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208365	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208635	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209734	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7212500	0.82[EUR][1000 genomes]
rs7216599	0.82[EUR][1000 genomes]
rs7216794	0.82[EUR][1000 genomes]
rs7219908	0.82[EUR][1000 genomes]
rs7222403	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7222984	0.83[EUR][1000 genomes]
rs7222987	0.81[EUR][1000 genomes]
rs7223305	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757494	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs8065337	0.80[AMR][1000 genomes]
rs8066143	0.82[EUR][1000 genomes]
rs8078716	0.82[EUR][1000 genomes]
rs8080649	0.81[EUR][1000 genomes]
rs850623	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs860335	0.94[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs888423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs918227	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs918228	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9889743	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9891739	0.83[AMR][1000 genomes]
rs9893832	0.85[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs9896411	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897246	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9897653	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898080	0.83[EUR][1000 genomes]
rs9901336	0.81[EUR][1000 genomes]
rs9901796	0.81[EUR][1000 genomes]
rs9902032	0.83[EUR][1000 genomes]
rs9907788	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9912775	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915758	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9944451	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv833394	chr17:19827714-19999577	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv907870	chr17:19871922-20001612	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv907871	chr17:19927699-20088492	Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv482438	chr17:19934376-20089005	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv907872	chr17:19945841-19996140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1056224	chr17:19946604-19993026	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv543258	chr17:19946604-19993026	Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv833395	chr17:19969959-20124084	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv2762522	chr17:19976462-19996429	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs35003563	SPECC1	Cis_1M	lymphoblastoid	RTeQTL
rs35003563	CYTSB	cis	cerebellum	SCAN
rs35003563	MTO1	trans	cerebellum	SCAN
rs35003563	AKAP10	cis	lymphoblastoid	seeQTL
rs35003563	TMEM11	cis	cerebellum	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19976200-19989400	Weak transcription	Lung	lung
2	chr17:19977600-19989600	Weak transcription	K562	blood
3	chr17:19978800-20000000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:19980600-19994600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr17:19980800-19990000	Weak transcription	A549	lung
6	chr17:19981200-19993000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:19982600-19993000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:19983200-19993400	Weak transcription	Spleen	Spleen
9	chr17:19985000-19989400	Weak transcription	Right Ventricle	heart
10	chr17:19985600-19993000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:19986200-19993000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:19986400-19990600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:19986400-19991400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:19987000-19994600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr17:19987800-19990200	Enhancers	NHDF-Ad	bronchial
16	chr17:19988000-19990200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr17:19988000-19990200	Enhancers	Ovary	ovary
18	chr17:19988000-19991200	Enhancers	Brain Angular Gyrus	brain
19	chr17:19988200-19989600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:19988200-19989600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr17:19988200-19990000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr17:19988200-19990200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:19988200-19990200	Enhancers	Brain Anterior Caudate	brain
24	chr17:19988200-19990200	Enhancers	Brain Hippocampus Middle	brain
25	chr17:19988200-19990200	Enhancers	Brain Substantia Nigra	brain
26	chr17:19988200-19990200	Enhancers	Left Ventricle	heart
27	chr17:19988200-19990200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr17:19988200-19990200	Enhancers	NH-A	brain
29	chr17:19988200-19990400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr17:19988200-19990400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr17:19988200-19990400	Enhancers	Fetal Muscle Trunk	muscle
32	chr17:19988200-19990600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr17:19988200-19991000	Enhancers	HSMMtube	muscle
34	chr17:19988200-19991200	Enhancers	Adipose Nuclei	Adipose
35	chr17:19988200-19991200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr17:19988400-19989400	Enhancers	Brain Germinal Matrix	brain
37	chr17:19988400-19989600	Enhancers	HSMM	muscle
38	chr17:19988400-19989800	Genic enhancers	Monocytes-CD14+_RO01746	blood
39	chr17:19988400-19990200	Enhancers	Esophagus	oesophagus
40	chr17:19988400-19990400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr17:19988600-19989400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr17:19988600-19990000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr17:19988600-19990200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr17:19988600-19993200	Weak transcription	GM12878-XiMat	blood
45	chr17:19988600-19994600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr17:19988800-19989600	Enhancers	Fetal Brain Male	brain
47	chr17:19988800-19991400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr17:19988800-19994600	Weak transcription	Right Atrium	heart
49	chr17:19989000-19989800	Enhancers	Placenta	Placenta
50	chr17:19989000-19990400	Enhancers	Brain Cingulate Gyrus	brain

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