Variant report

Variant	rs35006976
Chromosome Location	chr9:98184248-98184249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98184189..98187188-chr9:98271024..98273730,2	K562	blood:
2	chr9:98181672..98184453-chr9:98323294..98326169,2	K562	blood:
3	chr9:98182926..98184668-chr9:98252213..98254652,2	K562	blood:
4	chr9:98079253..98081177-chr9:98182351..98184720,2	K562	blood:
5	chr9:98078504..98081485-chr9:98182409..98185219,2	MCF-7	breast:
6	chr9:98184245..98186249-chr9:98271181..98273183,2	K562	blood:
7	chr9:98079253..98082500-chr9:98182351..98185745,3	K562	blood:

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10761388	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10993531	0.84[EUR][1000 genomes]
rs10993532	0.83[EUR][1000 genomes]
rs13289815	0.83[EUR][1000 genomes]
rs17295814	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2026077	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2202303	0.83[EUR][1000 genomes]
rs28698272	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28710957	0.82[ASN][1000 genomes]
rs34392622	0.82[EUR][1000 genomes]
rs72752375	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7854702	0.83[EUR][1000 genomes]
rs7860361	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98160400-98188400	Weak transcription	Pancreas	Pancrea
2	chr9:98173600-98188200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:98176400-98184800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:98176600-98185200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:98178000-98185200	Weak transcription	NHLF	lung
6	chr9:98182000-98188400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:98182800-98185400	Weak transcription	Right Ventricle	heart
8	chr9:98182800-98186000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:98183400-98184800	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr9:98183600-98184400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:98183600-98184800	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:98183600-98185800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:98183800-98184400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:98183800-98184800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:98183800-98185400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:98183800-98185600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr9:98183800-98185800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
18	chr9:98183800-98185800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr9:98183800-98185800	ZNF genes & repeats	A549	lung
20	chr9:98183800-98187200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:98184000-98184400	ZNF genes & repeats	Fetal Lung	lung
22	chr9:98184000-98184600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:98184000-98184600	Strong transcription	Fetal Intestine Large	intestine
24	chr9:98184000-98185000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
25	chr9:98184000-98185800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr9:98184000-98185800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
27	chr9:98184000-98185800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
28	chr9:98184200-98184400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:98184200-98184400	ZNF genes & repeats	K562	blood
30	chr9:98184200-98184600	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:98184200-98185000	Weak transcription	NHEK	skin
32	chr9:98184200-98185400	Weak transcription	HMEC	breast
33	chr9:98184200-98185800	ZNF genes & repeats	HepG2	liver
34	chr9:98184200-98186000	ZNF genes & repeats	Liver	Liver

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