Variant report

Variant	rs35014759
Chromosome Location	chr2:153539433-153539434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153537876..153540106-chr2:153567284..153570033,2	K562	blood:
2	chr2:153538954..153540864-chr2:153572505..153574245,2	K562	blood:
3	chr2:153538081..153540066-chr2:153574150..153575762,2	MCF-7	breast:
4	chr2:153529339..153532931-chr2:153537467..153540997,3	K562	blood:
5	chr2:153539091..153540596-chr2:153588784..153590668,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196504	Chromatin interaction
ENSG00000177917	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12994825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35986019	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834421	chr2:153470109-153664235	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3693438	chr2:153505376-153718246	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153505000-153540200	Strong transcription	Fetal Thymus	thymus
2	chr2:153505400-153540200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:153506200-153539800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:153506200-153546800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr2:153507000-153541600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:153508000-153542000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:153508000-153550800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr2:153508600-153539600	Strong transcription	Dnd41	blood
9	chr2:153508800-153540400	Strong transcription	Primary hematopoietic stem cells	blood
10	chr2:153509000-153539600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:153509200-153551200	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:153509800-153540000	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:153510400-153539600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:153510400-153540200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr2:153510600-153539800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:153510600-153540800	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr2:153511000-153539600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:153518400-153551000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:153518800-153558000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:153523000-153557800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:153523400-153571800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:153525000-153539800	Weak transcription	Right Ventricle	heart
23	chr2:153525000-153557800	Weak transcription	Lung	lung
24	chr2:153525000-153571800	Weak transcription	Small Intestine	intestine
25	chr2:153531000-153539800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr2:153532400-153550800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:153533200-153549000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr2:153533200-153551000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr2:153533200-153551600	Weak transcription	Colon Smooth Muscle	Colon
30	chr2:153533200-153558000	Weak transcription	Colonic Mucosa	Colon
31	chr2:153533400-153540200	Weak transcription	Spleen	Spleen
32	chr2:153533400-153540600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:153533400-153546800	Weak transcription	Fetal Intestine Small	intestine
34	chr2:153533400-153549600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr2:153533400-153557800	Weak transcription	Fetal Stomach	stomach
36	chr2:153533400-153558600	Weak transcription	Aorta	Aorta
37	chr2:153533400-153571600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr2:153533800-153539800	Strong transcription	HSMM	muscle
39	chr2:153533800-153550200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr2:153533800-153558000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr2:153533800-153572600	Weak transcription	Fetal Brain Male	brain
42	chr2:153534000-153546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:153536000-153546000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr2:153536000-153546000	Weak transcription	Fetal Intestine Large	intestine
45	chr2:153536000-153572600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr2:153536200-153543400	Weak transcription	Fetal Kidney	kidney
47	chr2:153536200-153550200	Weak transcription	NHLF	lung
48	chr2:153537000-153539800	Strong transcription	Primary T cells from cord blood	blood
49	chr2:153537200-153542600	Weak transcription	Psoas Muscle	Psoas
50	chr2:153537200-153543600	Weak transcription	NHEK	skin

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