Variant report

Variant	rs35020239
Chromosome Location	chr12:9114196-9114197
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9103173..9107180-chr12:9112850..9116183,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv819596	chr12:9113514-9141537	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1675215	chr12:9114195-9114196	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9103400-9116400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:9103600-9114200	Weak transcription	Aorta	Aorta
3	chr12:9103600-9114400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:9103600-9114600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:9104000-9114400	Weak transcription	Psoas Muscle	Psoas
6	chr12:9106600-9116000	Weak transcription	Left Ventricle	heart
7	chr12:9106800-9114400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr12:9106800-9114600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:9108600-9115200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr12:9109000-9114600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:9109000-9115600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:9109000-9121600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:9109600-9114800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:9110600-9114200	Weak transcription	K562	blood
15	chr12:9111000-9115600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr12:9112200-9116800	Weak transcription	Pancreas	Pancrea
17	chr12:9113200-9114200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr12:9113400-9114600	Enhancers	Primary T cells from cord blood	blood
19	chr12:9113400-9115000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr12:9113600-9115000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr12:9113600-9116000	Weak transcription	Thymus	Thymus
22	chr12:9113800-9115600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr12:9114000-9114800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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