Variant report

Variant	rs35026006
Chromosome Location	chr2:55425526-55425527
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55424063..55425912-chr2:55471234..55472747,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10172326	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10197309	0.88[AMR][1000 genomes]
rs1133181	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1133182	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11679663	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11685292	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12616435	0.84[ASN][1000 genomes]
rs12619400	0.81[ASN][1000 genomes]
rs12621144	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13012766	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13013134	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13019355	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13021215	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13023235	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13417057	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs14026	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2164714	0.85[ASN][1000 genomes]
rs2576724	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2864818	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34054131	0.86[ASN][1000 genomes]
rs34564471	0.89[ASN][1000 genomes]
rs35161040	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35890669	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3762509	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3935223	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4420737	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4671241	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4671242	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4672024	0.89[ASN][1000 genomes]
rs4672025	0.80[ASN][1000 genomes]
rs4672026	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4672027	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56095114	0.96[ASN][1000 genomes]
rs56339196	0.84[ASN][1000 genomes]
rs6545474	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6545475	0.82[ASN][1000 genomes]
rs6545478	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6714830	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6759911	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7595134	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010438	chr2:55373562-55450144	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522016	chr2:55404794-55560298	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35026006	FLJ31438	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55395600-55427000	Weak transcription	Left Ventricle	heart
2	chr2:55395800-55427000	Weak transcription	Aorta	Aorta
3	chr2:55397200-55450000	Weak transcription	NH-A	brain
4	chr2:55402800-55450000	Weak transcription	NHDF-Ad	bronchial
5	chr2:55403200-55426800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:55403200-55431800	Weak transcription	Fetal Brain Male	brain
7	chr2:55409200-55425800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:55411200-55427000	Weak transcription	Primary B cells from cord blood	blood
9	chr2:55412800-55428200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:55413000-55427000	Weak transcription	Brain Angular Gyrus	brain
11	chr2:55413600-55427000	Weak transcription	Fetal Lung	lung
12	chr2:55414600-55427000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:55415400-55450000	Weak transcription	GM12878-XiMat	blood
14	chr2:55416000-55426800	Weak transcription	Fetal Kidney	kidney
15	chr2:55416000-55428400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:55416200-55428800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr2:55416800-55450000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:55417400-55450200	Weak transcription	Placenta	Placenta
19	chr2:55417800-55439200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:55417800-55450000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:55418400-55433600	Weak transcription	Brain Anterior Caudate	brain
22	chr2:55419200-55427000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:55419200-55429600	Weak transcription	Fetal Intestine Large	intestine
24	chr2:55419400-55434400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:55419600-55431800	Weak transcription	Fetal Heart	heart
26	chr2:55420000-55427800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr2:55420400-55427800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr2:55420400-55433800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:55420600-55425600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:55420600-55433600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:55421000-55426400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:55421000-55433600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr2:55421200-55425600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:55421600-55425600	Weak transcription	Fetal Brain Female	brain
35	chr2:55421800-55427400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:55421800-55432000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr2:55422000-55425600	Strong transcription	Fetal Muscle Trunk	muscle
38	chr2:55422000-55427400	Strong transcription	Fetal Stomach	stomach
39	chr2:55422200-55427000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:55422600-55427000	Weak transcription	Brain Substantia Nigra	brain
41	chr2:55422800-55425600	Strong transcription	Primary T cells from cord blood	blood
42	chr2:55422800-55428000	Strong transcription	Ovary	ovary
43	chr2:55423000-55425600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr2:55423000-55426600	Strong transcription	Fetal Intestine Small	intestine
45	chr2:55423000-55427400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr2:55423200-55425600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:55423200-55438800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr2:55423600-55431000	Weak transcription	Gastric	stomach
49	chr2:55423800-55432800	Weak transcription	Pancreas	Pancrea
50	chr2:55423800-55448000	Weak transcription	HSMM	muscle

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