Variant report

Variant	rs35032247
Chromosome Location	chr4:347262-347263
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35896498	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011715	chr4:43860-823487	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1001899	chr4:68809-517736	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2830422	chr4:72247-681939	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv532703	chr4:72447-614414	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv931097	chr4:72447-683874	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv532702	chr4:72447-755236	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
7	nsv532704	chr4:85040-628550	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv1010829	chr4:147570-547070	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv536970	chr4:147570-547070	Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:332600-354800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr4:332600-356200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:333000-354200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr4:333000-355600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr4:333000-355600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr4:333000-374200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:333000-375000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:333200-347800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:333200-351000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:333400-355600	ZNF genes & repeats	Dnd41	blood
11	chr4:333400-356000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:333400-384800	ZNF genes & repeats	Liver	Liver
13	chr4:333600-354400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
14	chr4:333600-355000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:333600-355400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:334000-348200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
17	chr4:334200-347600	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:334200-354400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:335400-348200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr4:335400-352800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:335400-382000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:335600-355000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
23	chr4:336000-347600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:336000-348200	ZNF genes & repeats	Fetal Brain Female	brain
25	chr4:336600-347600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:337000-348200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:337600-355200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
28	chr4:337800-348200	ZNF genes & repeats	Primary T cells from cord blood	blood
29	chr4:339000-347800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr4:339000-348400	ZNF genes & repeats	Fetal Intestine Large	intestine
31	chr4:339600-348200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:340200-348200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:340200-354000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
34	chr4:340400-348200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:340400-348200	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr4:340400-348200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr4:340400-348200	ZNF genes & repeats	Small Intestine	intestine
38	chr4:340400-348200	ZNF genes & repeats	Thymus	Thymus
39	chr4:340400-348400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr4:340400-354000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
41	chr4:340800-348200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
42	chr4:340800-348200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:340800-348200	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr4:340800-348200	ZNF genes & repeats	Fetal Stomach	stomach
45	chr4:340800-348200	ZNF genes & repeats	Fetal Thymus	thymus
46	chr4:341000-348200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:341200-347800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
48	chr4:341200-348200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr4:341200-348200	ZNF genes & repeats	Lung	lung
50	chr4:341400-348200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood

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