Variant report

Variant	rs35032811
Chromosome Location	chr12:45685896-45685897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45679952..45682079-chr12:45684530..45686293,2	K562	blood:
2	chr12:45589220..45591342-chr12:45683683..45686226,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1015626	0.89[EUR][1000 genomes]
rs10459293	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10459294	0.84[ASN][1000 genomes]
rs10459295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492284	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10785566	0.89[EUR][1000 genomes]
rs10880765	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880766	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11182903	0.80[AMR][1000 genomes]
rs11182912	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11182916	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11182917	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11182919	0.80[ASN][1000 genomes]
rs11182921	0.82[ASN][1000 genomes]
rs11182923	0.80[ASN][1000 genomes]
rs11182927	0.82[ASN][1000 genomes]
rs11182931	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11182935	0.83[ASN][1000 genomes]
rs11182940	0.82[ASN][1000 genomes]
rs11182941	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11182942	0.81[ASN][1000 genomes]
rs11182943	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11182947	0.85[ASN][1000 genomes]
rs11182953	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11182954	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11182955	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11182957	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182961	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11182965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11182966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11182969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11182970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11182973	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11182974	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11182981	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11561532	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11611509	0.80[AMR][1000 genomes]
rs11612203	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11612233	0.82[ASN][1000 genomes]
rs11614082	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11614089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615850	0.82[ASN][1000 genomes]
rs12226944	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12227678	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12228399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12228733	0.80[AMR][1000 genomes]
rs12320437	0.82[ASN][1000 genomes]
rs12814332	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12815115	0.81[ASN][1000 genomes]
rs12815334	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12815723	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12818421	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12822746	0.82[ASN][1000 genomes]
rs1399721	0.89[EUR][1000 genomes]
rs17095551	0.82[ASN][1000 genomes]
rs17095557	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1913692	0.89[EUR][1000 genomes]
rs2012937	0.89[EUR][1000 genomes]
rs2408185	0.82[ASN][1000 genomes]
rs34024171	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34759896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35054776	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35400022	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3759077	0.82[ASN][1000 genomes]
rs3759081	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3759082	0.82[ASN][1000 genomes]
rs3782131	0.82[ASN][1000 genomes]
rs4326862	0.82[EUR][1000 genomes]
rs4768598	0.87[EUR][1000 genomes]
rs4768601	0.87[EUR][1000 genomes]
rs4768602	0.89[EUR][1000 genomes]
rs4768603	0.89[EUR][1000 genomes]
rs57560057	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57797434	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61923810	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61923825	0.82[ASN][1000 genomes]
rs61923830	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6582541	0.87[EUR][1000 genomes]
rs7136368	0.82[EUR][1000 genomes]
rs7138247	0.87[EUR][1000 genomes]
rs728590	0.89[EUR][1000 genomes]
rs7307262	0.89[EUR][1000 genomes]
rs7309615	0.82[EUR][1000 genomes]
rs7310046	0.89[EUR][1000 genomes]
rs7965430	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050923	chr12:45581310-45808289	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv690	chr12:45674127-45718859	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45654400-45725600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:45662800-45696800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:45666200-45709200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr12:45668400-45697800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:45668600-45693000	Weak transcription	Pancreas	Pancrea
6	chr12:45674200-45706800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:45674400-45692200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:45674600-45686400	Weak transcription	K562	blood
9	chr12:45675800-45709000	Weak transcription	Lung	lung
10	chr12:45676000-45686600	Weak transcription	Right Atrium	heart
11	chr12:45676200-45693000	Weak transcription	Fetal Stomach	stomach
12	chr12:45676400-45696000	Weak transcription	Fetal Thymus	thymus
13	chr12:45676400-45697800	Weak transcription	Dnd41	blood
14	chr12:45676400-45740400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr12:45677000-45689800	Weak transcription	Liver	Liver
16	chr12:45677000-45696000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr12:45677600-45698200	Weak transcription	Primary T cells from cord blood	blood
18	chr12:45677800-45691800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr12:45677800-45696000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr12:45678400-45686000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr12:45678400-45688000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:45678600-45686400	Weak transcription	Ovary	ovary
23	chr12:45678600-45691800	Weak transcription	HUVEC	blood vessel
24	chr12:45678800-45686400	Weak transcription	Fetal Lung	lung
25	chr12:45679200-45692200	Weak transcription	NHDF-Ad	bronchial
26	chr12:45679800-45686400	Weak transcription	Aorta	Aorta
27	chr12:45679800-45686400	Weak transcription	Left Ventricle	heart
28	chr12:45679800-45692200	Weak transcription	NH-A	brain
29	chr12:45680000-45736800	Weak transcription	Fetal Intestine Small	intestine
30	chr12:45680200-45692600	Weak transcription	Fetal Intestine Large	intestine
31	chr12:45680400-45697600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr12:45680800-45689400	Weak transcription	Placenta	Placenta
33	chr12:45680800-45693000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr12:45681000-45686200	Weak transcription	A549	lung
35	chr12:45681000-45698200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr12:45681200-45697800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr12:45683400-45686000	Enhancers	Rectal Smooth Muscle	rectum
38	chr12:45683400-45687200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr12:45683600-45709400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr12:45684000-45686200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr12:45684400-45686400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr12:45684400-45686400	Weak transcription	HSMM	muscle
43	chr12:45684400-45689800	Weak transcription	Hela-S3	cervix
44	chr12:45684400-45692200	Weak transcription	Osteobl	bone
45	chr12:45684400-45693000	Weak transcription	Small Intestine	intestine
46	chr12:45684400-45721800	Weak transcription	Esophagus	oesophagus
47	chr12:45684600-45686400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr12:45684600-45692400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr12:45684800-45686200	Weak transcription	HSMMtube	muscle
50	chr12:45684800-45686400	Weak transcription	HMEC	breast

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