Variant report

Variant	rs35033264
Chromosome Location	chr3:42727434-42727435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:42727173..42729004-chr3:42733372..42735922,3	K562	blood:
2	chr3:42727358..42730131-chr3:42775132..42777505,2	MCF-7	breast:
3	chr3:42725723..42728637-chr3:42737292..42738802,2	K562	blood:
4	chr3:42724857..42728583-chr3:42742957..42746730,4	K562	blood:

Variant related genes	Relation type
ENSG00000230970	Chromatin interaction
ENSG00000010282	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs339663	1.00[MEX][hapmap]
rs4404423	1.00[MEX][hapmap]
rs6773675	1.00[MEX][hapmap]
rs6777653	1.00[MEX][hapmap]
rs6802779	1.00[MEX][hapmap]
rs7610350	1.00[MEX][hapmap]
rs7612614	1.00[MEX][hapmap]
rs7648688	1.00[MEX][hapmap]
rs9755640	1.00[MEX][hapmap]
rs9882356	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002944	chr3:42559762-42728909	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42724200-42729400	Enhancers	Fetal Heart	heart
2	chr3:42725200-42730000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:42725400-42737000	Weak transcription	Right Atrium	heart
4	chr3:42726000-42727600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:42726200-42727800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
6	chr3:42726200-42727800	Enhancers	Esophagus	oesophagus
7	chr3:42726200-42727800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr3:42726200-42728200	Enhancers	Left Ventricle	heart
9	chr3:42726200-42730800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:42726400-42727800	Bivalent Enhancer	Placenta	Placenta
11	chr3:42727000-42727600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr3:42727000-42727600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
13	chr3:42727000-42727600	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr3:42727000-42727600	Bivalent Enhancer	Spleen	Spleen
15	chr3:42727000-42727600	Flanking Active TSS	HSMMtube	muscle
16	chr3:42727000-42727800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:42727000-42727800	Bivalent Enhancer	HMEC	breast
18	chr3:42727000-42728000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:42727000-42728000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:42727000-42728000	Bivalent Enhancer	Fetal Brain Male	brain
21	chr3:42727000-42728000	Bivalent/Poised TSS	Fetal Brain Female	brain
22	chr3:42727000-42728000	Bivalent Enhancer	Lung	lung
23	chr3:42727000-42728200	Enhancers	Pancreas	Pancrea
24	chr3:42727000-42728200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr3:42727000-42729800	Active TSS	Psoas Muscle	Psoas
26	chr3:42727200-42727600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:42727200-42727600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
28	chr3:42727200-42727600	Bivalent/Poised TSS	NH-A	brain
29	chr3:42727200-42727800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:42727200-42727800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
31	chr3:42727200-42727800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:42727200-42727800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:42727200-42727800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
34	chr3:42727200-42727800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
35	chr3:42727200-42728000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:42727200-42728000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
37	chr3:42727200-42728000	Enhancers	Gastric	stomach
38	chr3:42727400-42727600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
39	chr3:42727400-42727600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:42727400-42727600	Active TSS	Colonic Mucosa	Colon
41	chr3:42727400-42727600	Bivalent/Poised TSS	Fetal Kidney	kidney
42	chr3:42727400-42727600	Flanking Bivalent TSS/Enh	HSMM	muscle
43	chr3:42727400-42727600	Flanking Bivalent TSS/Enh	NHDF-Ad	bronchial
44	chr3:42727400-42727600	Flanking Bivalent TSS/Enh	NHLF	lung
45	chr3:42727400-42727800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:42727400-42727800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:42727400-42727800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:42727400-42727800	Enhancers	Primary B cells from peripheral blood	blood
49	chr3:42727400-42727800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:42727400-42727800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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