Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213576699..213578907-chr2:214015888..214018494,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000030419	Chromatin interaction
ENSG00000270659	Chromatin interaction

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13007317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13024894	0.95[EUR][1000 genomes]
rs2371701	0.98[EUR][1000 genomes]
rs34583273	0.98[EUR][1000 genomes]
rs35125189	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35359727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460093	chr2:213563072-213610359	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv584426	chr2:213563072-213610359	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213572800-213578200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213575400-213577600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:213576000-213578200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:213576000-213579000	Enhancers	HMEC	breast
5	chr2:213576000-213579200	Enhancers	NHEK	skin
6	chr2:213576200-213577600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:213576800-213577600	Enhancers	NH-A	brain
8	chr2:213576800-213578800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:213577000-213577600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:213577000-213578000	Enhancers	NHDF-Ad	bronchial
11	chr2:213577000-213578200	Enhancers	NHLF	lung
12	chr2:213577000-213579000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:213577000-213579200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:213577200-213577600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr2:213577200-213577600	Enhancers	Brain Hippocampus Middle	brain
16	chr2:213577200-213578000	Enhancers	Brain Anterior Caudate	brain
17	chr2:213577200-213578000	Enhancers	HSMM	muscle
18	chr2:213577200-213578200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:213577200-213579200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:213577400-213578000	Enhancers	Brain Inferior Temporal Lobe	brain

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