Variant report

Variant	rs35039387
Chromosome Location	chr5:113751887-113751888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13174407	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2199218	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113742600-113753200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:113744800-113753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:113744800-113754200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:113749600-113756000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:113751400-113752200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:113751600-113752000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:113751600-113752000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:113751600-113752000	Enhancers	Brain Cingulate Gyrus	brain
9	chr5:113751600-113752200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:113751800-113752000	Enhancers	Liver	Liver
11	chr5:113751800-113752200	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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