Variant report

Variant	rs35046325
Chromosome Location	chr3:55913165-55913166
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12633538	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12636793	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1379710	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458066	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17056065	0.81[EUR][1000 genomes]
rs17056081	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17056090	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17056098	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1902861	0.80[EUR][1000 genomes]
rs55967115	0.84[EUR][1000 genomes]
rs55971093	0.84[EUR][1000 genomes]
rs56211981	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253660	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62253661	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62253670	0.86[EUR][1000 genomes]
rs62256771	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62256772	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62256773	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62256774	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62256778	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6763408	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6769408	0.88[AMR][1000 genomes]
rs73073394	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73075332	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73075334	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs733509	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7618265	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7649504	0.82[EUR][1000 genomes]
rs897965	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs993594	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55893600-55923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:55903800-55922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:55909200-55913400	Weak transcription	A549	lung
4	chr3:55912200-55913200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:55912200-55913200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:55912200-55913200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:55912200-55913200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:55912200-55916000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:55912400-55913400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:55912800-55914600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:55913000-55913400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:55913000-55914000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links