Variant report

Variant	rs35052952
Chromosome Location	chr4:125853391-125853392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10004729	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10004734	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10030199	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12374334	0.81[EUR][1000 genomes]
rs12506706	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12650300	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1395328	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1483611	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16997819	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17008768	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1909101	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1995628	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28733838	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62320480	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62320498	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62323305	0.89[EUR][1000 genomes]
rs6810487	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6826258	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6829998	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72685850	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7672680	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7677690	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7677713	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9637630	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9654205	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs976412	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs976539	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879889	chr4:125816783-125853748	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125844800-125860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125845600-125857600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:125847600-125854600	Weak transcription	Fetal Heart	heart
4	chr4:125851600-125856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:125852400-125857200	Weak transcription	HSMMtube	muscle
6	chr4:125852600-125854600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:125852600-125856200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:125852800-125857800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:125853000-125857400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:125853000-125857400	Weak transcription	Osteobl	bone
11	chr4:125853200-125856000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:125853200-125856000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:125853200-125856000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:125853200-125856200	Weak transcription	Hela-S3	cervix
15	chr4:125853200-125859000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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