Variant report

Variant	rs35057534
Chromosome Location	chr9:2799271-2799272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:2794008..2796188-chr9:2797180..2799837,2	K562	blood:
2	chr9:2787061..2789950-chr9:2798613..2800282,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13296647	1.00[ASN][1000 genomes]
rs62533896	1.00[AFR][1000 genomes]
rs62533910	1.00[AFR][1000 genomes]
rs71506619	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv916750	chr9:2430846-2826706	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1017581	chr9:2494815-3172020	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv539934	chr9:2494815-3172020	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv892079	chr9:2681430-2931341	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv892081	chr9:2691186-2851026	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv892082	chr9:2699606-2833267	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1024262	chr9:2703159-3067931	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1028011	chr9:2759097-2904277	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv1022873	chr9:2768825-2863264	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv1032474	chr9:2773573-2804799	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2775000-2801600	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:2777800-2800000	Weak transcription	Colonic Mucosa	Colon
3	chr9:2778000-2801600	Weak transcription	Small Intestine	intestine
4	chr9:2778000-2801800	Weak transcription	Gastric	stomach
5	chr9:2778000-2803200	Weak transcription	Aorta	Aorta
6	chr9:2778400-2800200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:2778600-2801400	Weak transcription	Fetal Brain Male	brain
8	chr9:2778600-2801600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:2778800-2799600	Weak transcription	Brain Angular Gyrus	brain
10	chr9:2778800-2800000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:2778800-2802800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:2779200-2801600	Weak transcription	Brain Substantia Nigra	brain
13	chr9:2782400-2800800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:2786400-2800400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:2787200-2802200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:2787600-2808000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:2787800-2801800	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr9:2787800-2812200	Strong transcription	Fetal Muscle Trunk	muscle
19	chr9:2788200-2800200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:2788400-2809400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:2789000-2809000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:2790600-2800200	Strong transcription	NHEK	skin
23	chr9:2791600-2800000	Weak transcription	Placenta	Placenta
24	chr9:2791600-2815800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr9:2791800-2800200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr9:2791800-2800200	Weak transcription	Brain Germinal Matrix	brain
27	chr9:2791800-2801400	Weak transcription	Right Ventricle	heart
28	chr9:2791800-2801600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:2791800-2801800	Weak transcription	Pancreas	Pancrea
30	chr9:2791800-2821800	Strong transcription	Primary T cells from cord blood	blood
31	chr9:2792000-2800200	Weak transcription	Fetal Brain Female	brain
32	chr9:2792000-2800200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:2792000-2800400	Weak transcription	Spleen	Spleen
34	chr9:2792000-2801800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr9:2792000-2808600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr9:2792000-2809400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:2792000-2822200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr9:2792200-2813000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:2792400-2800200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:2792400-2801600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr9:2792800-2800200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:2792800-2808600	Strong transcription	HSMM	muscle
43	chr9:2792800-2809600	Strong transcription	Liver	Liver
44	chr9:2793000-2800200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:2793000-2808200	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:2793200-2799600	Strong transcription	Primary hematopoietic stem cells	blood
47	chr9:2793200-2799800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:2793200-2800200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr9:2793200-2800200	Strong transcription	A549	lung
50	chr9:2793200-2800600	Weak transcription	Ovary	ovary

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