Variant report

Variant	rs35059554
Chromosome Location	chr11:86209110-86209111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86208558..86211731-chr11:86511256..86513544,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11234688	0.84[ASN][1000 genomes]
rs12420965	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3182235	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv274960	chr11:86207030-86209556	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3409146	chr11:86208841-86209438	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:86187600-86218600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:86188000-86210400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:86189200-86222600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:86189600-86221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:86195200-86222200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:86196200-86213600	Weak transcription	Brain Germinal Matrix	brain
9	chr11:86198000-86211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:86198200-86210600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:86198600-86222800	Weak transcription	Esophagus	oesophagus
12	chr11:86201400-86210000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:86202400-86210000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:86202800-86226400	Weak transcription	Fetal Lung	lung
15	chr11:86204000-86209400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:86204000-86222200	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:86204200-86210800	Weak transcription	Fetal Heart	heart
18	chr11:86204600-86220000	Weak transcription	Colonic Mucosa	Colon
19	chr11:86204800-86209200	Weak transcription	Left Ventricle	heart
20	chr11:86206600-86210200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:86206600-86210600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:86206800-86214200	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:86206800-86214600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:86206800-86214800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:86207000-86213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:86207400-86209400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:86207800-86209400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:86207800-86209800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr11:86208000-86209200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:86208000-86209200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:86208000-86209200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:86208000-86209200	Enhancers	Placenta Amnion	Placenta Amnion
33	chr11:86208000-86209200	Enhancers	HMEC	breast
34	chr11:86208000-86209400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:86208000-86209600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:86208000-86209600	Enhancers	Placenta	Placenta
37	chr11:86208200-86209200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr11:86208200-86209200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:86208200-86209200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:86208200-86209200	Enhancers	Adipose Nuclei	Adipose
41	chr11:86208200-86209200	Strong transcription	Fetal Stomach	stomach
42	chr11:86208200-86209200	Genic enhancers	Lung	lung
43	chr11:86208200-86209200	Enhancers	Hela-S3	cervix
44	chr11:86208200-86209200	Enhancers	NH-A	brain
45	chr11:86208200-86209200	Enhancers	NHLF	lung
46	chr11:86208200-86209200	Enhancers	Osteobl	bone
47	chr11:86208200-86209400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:86208200-86209400	Enhancers	Muscle Satellite Cultured Cells	--
49	chr11:86208200-86209400	Enhancers	HSMM	muscle
50	chr11:86208200-86209400	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links