Variant report

Variant	rs35061908
Chromosome Location	chr1:114508757-114508758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:114507526..114510965-chr1:114511227..114514003,3	MCF-7	breast:
2	chr1:114502634..114507874-chr1:114508167..114510727,5	K562	blood:
3	chr1:114506613..114508905-chr1:114518738..114521439,2	MCF-7	breast:
4	chr1:114507385..114510097-chr1:114511069..114514581,3	MCF-7	breast:
5	chr1:114508678..114510419-chr1:114520507..114522325,2	MCF-7	breast:
6	chr1:114499811..114502559-chr1:114508149..114511196,3	K562	blood:
7	chr1:114503627..114506393-chr1:114507397..114510266,3	MCF-7	breast:
8	chr1:114498488..114500223-chr1:114507402..114509536,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000116774	Chromatin interaction
ENSG00000163349	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1039538	1.00[ASN][1000 genomes]
rs12072840	1.00[ASN][1000 genomes]
rs1394074	1.00[ASN][1000 genomes]
rs41274108	1.00[ASN][1000 genomes]
rs59099346	1.00[ASN][1000 genomes]
rs61013095	1.00[ASN][1000 genomes]
rs61324555	1.00[ASN][1000 genomes]
rs72988605	1.00[ASN][1000 genomes]
rs72988610	1.00[ASN][1000 genomes]
rs73003971	1.00[ASN][1000 genomes]
rs73003974	1.00[ASN][1000 genomes]
rs73003979	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114479000-114517600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:114484000-114510400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:114484000-114510400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:114484000-114511200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:114484400-114510400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:114485000-114510400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:114489800-114510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:114490200-114510800	Weak transcription	A549	lung
9	chr1:114490600-114512000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:114492800-114518600	Strong transcription	Dnd41	blood
11	chr1:114493400-114517600	Strong transcription	Fetal Thymus	thymus
12	chr1:114495400-114517400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:114495800-114516800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:114495800-114518200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr1:114496000-114517000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:114496400-114516000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:114496400-114516400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr1:114496400-114517000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:114496400-114517200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr1:114496400-114517400	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:114496400-114517600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr1:114496400-114518200	Strong transcription	K562	blood
23	chr1:114496400-114519400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr1:114496600-114518800	Strong transcription	Primary B cells from cord blood	blood
25	chr1:114496800-114508800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:114497000-114516400	Strong transcription	Fetal Intestine Large	intestine
27	chr1:114497000-114517000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr1:114497200-114516400	Strong transcription	Primary hematopoietic stem cells	blood
29	chr1:114497200-114516400	Strong transcription	GM12878-XiMat	blood
30	chr1:114497600-114517600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:114497800-114517400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr1:114498000-114517400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr1:114498800-114518200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr1:114499600-114511200	Weak transcription	Stomach Mucosa	stomach
35	chr1:114500000-114517600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr1:114501000-114510200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:114501800-114516800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr1:114502000-114508800	Weak transcription	Fetal Brain Male	brain
39	chr1:114502000-114511200	Weak transcription	Fetal Heart	heart
40	chr1:114502200-114510200	Weak transcription	Right Ventricle	heart
41	chr1:114502800-114510400	Weak transcription	Ovary	ovary
42	chr1:114503800-114517400	Strong transcription	Placenta	Placenta
43	chr1:114503800-114518600	Strong transcription	Brain Germinal Matrix	brain
44	chr1:114504000-114514800	Strong transcription	Hela-S3	cervix
45	chr1:114504200-114516800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:114504400-114509200	Strong transcription	Left Ventricle	heart
47	chr1:114504400-114517000	Strong transcription	Osteobl	bone
48	chr1:114504600-114517600	Strong transcription	HSMM	muscle
49	chr1:114504600-114517800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:114504600-114519000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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