Variant report

Variant	rs35068782
Chromosome Location	chr2:62837278-62837279
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10046686	0.87[ASN][1000 genomes]
rs10081441	0.86[ASN][1000 genomes]
rs10088722	0.86[ASN][1000 genomes]
rs10091232	0.87[ASN][1000 genomes]
rs10091245	0.85[ASN][1000 genomes]
rs10094238	0.88[ASN][1000 genomes]
rs10094828	0.90[ASN][1000 genomes]
rs10095636	0.85[ASN][1000 genomes]
rs10095682	0.85[ASN][1000 genomes]
rs10099017	0.85[ASN][1000 genomes]
rs10100687	0.91[ASN][1000 genomes]
rs10100806	0.91[ASN][1000 genomes]
rs10104630	0.91[ASN][1000 genomes]
rs10104687	0.86[ASN][1000 genomes]
rs10105658	0.88[ASN][1000 genomes]
rs10109018	0.86[ASN][1000 genomes]
rs10110570	0.85[ASN][1000 genomes]
rs10110879	0.86[ASN][1000 genomes]
rs1025232	0.88[ASN][1000 genomes]
rs10958229	0.88[ASN][1000 genomes]
rs10958230	0.86[ASN][1000 genomes]
rs10958232	0.89[ASN][1000 genomes]
rs10958233	0.87[ASN][1000 genomes]
rs11775584	0.88[ASN][1000 genomes]
rs12542468	0.91[ASN][1000 genomes]
rs12604	0.86[ASN][1000 genomes]
rs12675186	0.86[ASN][1000 genomes]
rs13267859	0.88[ASN][1000 genomes]
rs1365668	0.82[ASN][1000 genomes]
rs1365677	0.85[ASN][1000 genomes]
rs1365678	0.85[ASN][1000 genomes]
rs1404365	0.91[ASN][1000 genomes]
rs1524642	0.91[ASN][1000 genomes]
rs17811680	0.82[ASN][1000 genomes]
rs1851973	0.91[ASN][1000 genomes]
rs1946400	0.87[ASN][1000 genomes]
rs1991347	0.88[ASN][1000 genomes]
rs1991348	0.88[ASN][1000 genomes]
rs1991349	0.88[ASN][1000 genomes]
rs1991350	0.87[ASN][1000 genomes]
rs1991351	0.88[ASN][1000 genomes]
rs1991352	0.88[ASN][1000 genomes]
rs2059678	0.86[ASN][1000 genomes]
rs2059679	0.84[ASN][1000 genomes]
rs2059680	0.88[ASN][1000 genomes]
rs2081673	0.90[ASN][1000 genomes]
rs2140688	0.91[ASN][1000 genomes]
rs2712	0.88[ASN][1000 genomes]
rs28592585	0.88[ASN][1000 genomes]
rs35382421	0.85[ASN][1000 genomes]
rs3900098	0.88[ASN][1000 genomes]
rs3937521	0.88[ASN][1000 genomes]
rs3942601	0.91[ASN][1000 genomes]
rs4740035	0.82[ASN][1000 genomes]
rs6990756	0.88[ASN][1000 genomes]
rs7003643	0.90[ASN][1000 genomes]
rs7008839	0.88[ASN][1000 genomes]
rs7010343	0.85[ASN][1000 genomes]
rs7832097	0.86[ASN][1000 genomes]
rs7838564	0.88[ASN][1000 genomes]
rs7838940	0.85[ASN][1000 genomes]
rs9298433	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9650296	0.89[ASN][1000 genomes]
rs965734	0.88[ASN][1000 genomes]
rs9692810	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9692962	0.91[ASN][1000 genomes]
rs9693371	0.91[ASN][1000 genomes]
rs987477	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535766	chr2:62177655-62929746	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916190	chr2:62233785-63006200	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv932487	chr2:62258290-63006200	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv834226	chr2:62745027-62894013	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv874232	chr2:62758044-62906084	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv834237	chr2:62762743-62926036	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35068782	C8orf59	Cis_1M	lymphoblastoid	RTeQTL
rs35068782	LRRCC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:62825400-62839000	Weak transcription	Osteobl	bone
2	chr2:62831800-62839000	Weak transcription	NHDF-Ad	bronchial
3	chr2:62832200-62868800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links