Variant report

Variant	rs35069141
Chromosome Location	chr16:71997500-71997501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71928111..71930249-chr16:71995489..71998686,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102984	Chromatin interaction
ENSG00000182149	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10852507	0.81[ASN][1000 genomes]
rs11639843	0.81[ASN][1000 genomes]
rs11865456	0.81[ASN][1000 genomes]
rs12149307	0.81[ASN][1000 genomes]
rs12149325	0.81[ASN][1000 genomes]
rs12445564	0.81[ASN][1000 genomes]
rs12445641	0.81[ASN][1000 genomes]
rs12921279	0.81[ASN][1000 genomes]
rs12927691	0.81[ASN][1000 genomes]
rs12934512	0.81[ASN][1000 genomes]
rs17358402	0.81[ASN][1000 genomes]
rs34029919	0.81[ASN][1000 genomes]
rs34101687	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35404791	0.81[ASN][1000 genomes]
rs36182990	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71384782	0.81[ASN][1000 genomes]
rs71386942	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7191848	0.81[ASN][1000 genomes]
rs7195988	0.81[ASN][1000 genomes]
rs8049508	0.81[ASN][1000 genomes]
rs9940234	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1056439	chr16:71916498-72051144	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1055854	chr16:71922144-72082886	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833273	chr16:71971805-72152854	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	esv2758430	chr16:71976344-72274347	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	esv2758654	chr16:71976344-72274347	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv428329	chr16:71976344-72274347	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv572950	chr16:71988728-72020323	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71969600-71999200	Weak transcription	Liver	Liver
2	chr16:71994200-71999000	Weak transcription	Stomach Mucosa	stomach
3	chr16:71995800-72001000	Weak transcription	Brain Hippocampus Middle	brain
4	chr16:71996600-72000400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr16:71997000-71997600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr16:71997000-71998000	Enhancers	Primary T cells from cord blood	blood
7	chr16:71997000-71998000	Enhancers	HepG2	liver
8	chr16:71997200-71997600	Enhancers	Fetal Thymus	thymus

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