Variant report

Variant	rs35069249
Chromosome Location	chr10:6412543-6412544
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6409324..6412633-chr10:6424291..6427904,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv5676	chr10:6381200-6428950	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv50	chr10:6393063-6422816	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1044870	chr10:6393260-6419462	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv508567	chr10:6407682-6427637	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv1808540	chr10:6407737-6419765	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv435913	chr10:6410196-6417665	Enhancers Bivalent/Poised TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2605106	chr10:6410762-6418111	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3424380	chr10:6410946-6417844	Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv436648	chr10:6411138-6417630	Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3463062	chr10:6411172-6418006	Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3506865	chr10:6411206-6418035	Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv7971	chr10:6411301-6417921	Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv2249734	chr10:6411393-6417825	Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv512143	chr10:6411430-6417800	Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3357644	chr10:6411442-6417764	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3463397	chr10:6411456-6417736	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv3506869	chr10:6411473-6417724	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3506866	chr10:6411477-6417741	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv3506867	chr10:6411492-6417688	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv3506870	chr10:6411494-6417666	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv3463286	chr10:6411501-6417702	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv1004516	chr10:6411510-6417734	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	esv3463508	chr10:6411515-6417657	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	esv3506864	chr10:6411520-6417694	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	esv3506871	chr10:6411529-6417678	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	esv3463619	chr10:6411529-6417698	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	esv3463175	chr10:6411547-6417639	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	esv4721	chr10:6411547-6417707	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv498719	chr10:6411563-6417647	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	esv3506868	chr10:6411564-6417631	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	esv3463730	chr10:6411564-6417647	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	esv3506872	chr10:6411564-6417647	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	esv1684899	chr10:6411580-6417646	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6407400-6422000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:6410600-6421000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:6411000-6423800	Weak transcription	Aorta	Aorta

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