Variant report

Variant	rs35071802
Chromosome Location	chr2:97402064-97402065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:97400480..97403268-chr2:97404276..97407590,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114988	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12329128	0.84[GIH][hapmap]
rs12477963	1.00[CHD][hapmap];0.83[GIH][hapmap];0.94[MKK][hapmap]
rs2678381	0.92[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap]
rs34029026	1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.87[AFR][1000 genomes]
rs6706734	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	esv3460902	chr2:97138421-97459342	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	esv3460903	chr2:97138421-97459342	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	nsv999871	chr2:97157196-97407711	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv535829	chr2:97157196-97407711	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv469775	chr2:97240926-97412491	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv482586	chr2:97240926-97412491	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv834306	chr2:97241115-97412938	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv874680	chr2:97309574-97678319	Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
15	nsv834307	chr2:97321447-97479266	Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv526313	chr2:97333492-97660619	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35071802	TMEM131	cis	parietal	SCAN
rs35071802	LOC285033	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97368400-97405000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:97376000-97404000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:97378000-97403600	Weak transcription	Stomach Mucosa	stomach
4	chr2:97381000-97403800	Strong transcription	Fetal Muscle Leg	muscle
5	chr2:97381200-97404800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:97383000-97403800	Strong transcription	Fetal Stomach	stomach
7	chr2:97385400-97403400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:97385800-97403800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:97390400-97404000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr2:97390800-97403400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:97390800-97403600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:97391200-97403400	Strong transcription	Duodenum Mucosa	Duodenum
13	chr2:97391400-97403400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:97391600-97403000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:97391600-97403200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:97391600-97403400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:97391600-97403600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr2:97391600-97403600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:97391600-97403800	Strong transcription	Fetal Thymus	thymus
20	chr2:97391600-97404000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:97392000-97403200	Strong transcription	A549	lung
22	chr2:97392000-97403800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr2:97392200-97402200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr2:97392200-97402400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:97392200-97403400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr2:97392400-97402800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:97392400-97403400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:97392600-97403000	Strong transcription	Thymus	Thymus
29	chr2:97392600-97403800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr2:97392800-97403400	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr2:97393000-97402600	Strong transcription	Primary B cells from peripheral blood	blood
32	chr2:97393000-97402600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:97393000-97403000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr2:97393600-97403200	Strong transcription	Placenta	Placenta
35	chr2:97394200-97403200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr2:97395000-97402600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr2:97396000-97403000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr2:97396200-97402600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr2:97396200-97403000	Strong transcription	HSMM	muscle
40	chr2:97396200-97403600	Weak transcription	Small Intestine	intestine
41	chr2:97396200-97403800	Strong transcription	HepG2	liver
42	chr2:97396400-97403600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr2:97396600-97403000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr2:97397000-97403000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:97397000-97403000	Strong transcription	Osteobl	bone
46	chr2:97397200-97403600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr2:97397400-97403600	Strong transcription	NHEK	skin
48	chr2:97397800-97402600	Strong transcription	HMEC	breast
49	chr2:97398200-97403000	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr2:97398400-97402200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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