Variant report

Variant	rs35077481
Chromosome Location	chr19:38802859-38802860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:38802749-38804772	K562	blood:	n/a	n/a
2	POLR2A	chr19:38802810-38803455	A549	lung:	n/a	n/a
3	POLR2A	chr19:38802788-38803628	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr19:38802757-38803003	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr19:38802847-38803487	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38802009..38804221-chr19:38806405..38809236,2	K562	blood:
2	chr19:38795298..38801659-chr19:38801673..38807893,10	K562	blood:

Variant related genes	Relation type
YIF1B	TF binding region
ENSG00000167645	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11878707	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34614180	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35323359	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35710536	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3859550	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71354996	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7253827	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv833822	chr19:38760748-38945105	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv911658	chr19:38785318-39002140	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv960928	chr19:38790012-38822380	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38771400-38805800	Weak transcription	Right Atrium	heart
2	chr19:38781200-38805800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr19:38782000-38806000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr19:38784000-38805800	Weak transcription	Primary B cells from cord blood	blood
5	chr19:38792000-38805400	Weak transcription	NHDF-Ad	bronchial
6	chr19:38792000-38805800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:38795200-38805800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr19:38795400-38805800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr19:38795600-38805800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr19:38796000-38803400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr19:38796200-38804400	Weak transcription	NH-A	brain
12	chr19:38796200-38805400	Weak transcription	HepG2	liver
13	chr19:38796400-38803200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr19:38796400-38805400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr19:38796400-38805600	Weak transcription	Hela-S3	cervix
16	chr19:38796400-38805800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr19:38796400-38805800	Weak transcription	HUVEC	blood vessel
18	chr19:38796600-38805600	Weak transcription	HMEC	breast
19	chr19:38796600-38805800	Weak transcription	Fetal Heart	heart
20	chr19:38796600-38805800	Weak transcription	Stomach Mucosa	stomach
21	chr19:38798200-38805800	Weak transcription	Small Intestine	intestine
22	chr19:38798400-38805800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr19:38798400-38805800	Weak transcription	Fetal Thymus	thymus
24	chr19:38798600-38805400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr19:38798600-38805800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr19:38798800-38804200	Weak transcription	GM12878-XiMat	blood
27	chr19:38798800-38805200	Weak transcription	HSMM	muscle
28	chr19:38798800-38805600	Weak transcription	HSMMtube	muscle
29	chr19:38799000-38804200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr19:38799000-38805800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr19:38799200-38805600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr19:38799400-38804200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr19:38799400-38805600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr19:38799400-38805800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:38799400-38805800	Weak transcription	Brain Substantia Nigra	brain
36	chr19:38799400-38805800	Weak transcription	Fetal Lung	lung
37	chr19:38799600-38805400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr19:38799600-38805400	Weak transcription	Osteobl	bone
39	chr19:38799600-38805600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:38799600-38805600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr19:38799600-38805600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr19:38799600-38805600	Weak transcription	Esophagus	oesophagus
43	chr19:38799600-38805800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr19:38799600-38805800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr19:38799600-38805800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr19:38799800-38805800	Weak transcription	Primary T cells from cord blood	blood
47	chr19:38800000-38805800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr19:38800000-38805800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr19:38800000-38805800	Weak transcription	Colon Smooth Muscle	Colon
50	chr19:38800200-38804200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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