Variant report

Variant	rs35082269
Chromosome Location	chr7:100864711-100864712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:100864639-100864828	HepG2	liver:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100859700..100862927-chr7:100863052..100866687,4	MCF-7	breast:
2	chr7:100864675..100866290-chr7:100886676..100889459,3	MCF-7	breast:
3	chr7:100863090..100866963-chr7:100885534..100889185,4	MCF-7	breast:
4	chr7:100864193..100867092-chr7:100868840..100870862,2	K562	blood:
5	chr7:100808076..100812812-chr7:100858488..100864832,8	MCF-7	breast:
6	chr7:100864237..100866284-chr7:100885658..100887692,2	K562	blood:
7	chr7:100863732..100865673-chr7:100872305..100875910,3	K562	blood:
8	chr7:100859877..100865511-chr7:100878168..100882490,7	MCF-7	breast:
9	chr7:100860186..100862563-chr7:100864132..100865896,2	K562	blood:
10	chr7:100864474..100866546-chr7:100882823..100885224,2	MCF-7	breast:

No data

Variant related genes	Relation type
PLOD3	TF binding region
ENSG00000214253	Chromatin interaction
ENSG00000128564	Chromatin interaction
ENSG00000106400	Chromatin interaction
ENSG00000106404	Chromatin interaction
ENSG00000106397	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10250685	0.96[ASN][1000 genomes]
rs1047319	0.96[ASN][1000 genomes]
rs1056678	0.95[ASN][1000 genomes]
rs10953330	0.91[ASN][1000 genomes]
rs11769624	0.95[ASN][1000 genomes]
rs17319250	0.95[ASN][1000 genomes]
rs2072168	0.98[ASN][1000 genomes]
rs2302428	0.96[ASN][1000 genomes]
rs28361887	0.95[ASN][1000 genomes]
rs35550811	0.86[ASN][1000 genomes]
rs3757459	0.96[ASN][1000 genomes]
rs3757460	0.96[ASN][1000 genomes]
rs4729672	0.97[ASN][1000 genomes]
rs62482972	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv1018841	chr7:100760410-100868299	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv534186	chr7:100773842-100898909	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv607973	chr7:100782460-100873835	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv464651	chr7:100792810-100971604	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv607974	chr7:100792810-100971604	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	esv2752134	chr7:100800131-101141867	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv607975	chr7:100804140-100873835	Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv464652	chr7:100804140-100881640	Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv607976	chr7:100804140-100881640	Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv888817	chr7:100804140-100881640	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv607977	chr7:100818846-100881640	Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv831076	chr7:100828847-101011674	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
18	nsv888818	chr7:100833153-100895480	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
19	nsv888819	chr7:100833153-100920007	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
20	esv2422326	chr7:100833449-101000131	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
21	nsv607978	chr7:100861213-100971604	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100862200-100864800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:100862200-100865000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:100862200-100865000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:100862200-100865400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:100862200-100866800	Weak transcription	Small Intestine	intestine
6	chr7:100862200-100875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:100862400-100865000	Weak transcription	A549	lung
8	chr7:100862400-100865200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:100862400-100865200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:100862400-100866000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:100862400-100866000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:100862400-100866000	Weak transcription	Fetal Lung	lung
13	chr7:100862400-100866000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:100862400-100866800	Weak transcription	NHDF-Ad	bronchial
15	chr7:100862400-100867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:100862400-100867000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:100862400-100867200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:100862400-100867800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:100862400-100868200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:100862400-100874400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:100862400-100875400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:100862400-100887000	Weak transcription	Fetal Kidney	kidney
23	chr7:100862600-100864800	Weak transcription	NHLF	lung
24	chr7:100862600-100865000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:100862600-100865000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:100862600-100865000	Weak transcription	Brain Anterior Caudate	brain
27	chr7:100862600-100865000	Weak transcription	Esophagus	oesophagus
28	chr7:100862600-100865200	Weak transcription	Brain Germinal Matrix	brain
29	chr7:100862600-100865400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr7:100862600-100865400	Weak transcription	Brain Angular Gyrus	brain
31	chr7:100862600-100865400	Weak transcription	Fetal Brain Female	brain
32	chr7:100862600-100865800	Weak transcription	NHEK	skin
33	chr7:100862600-100866000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:100862600-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:100862600-100866000	Weak transcription	Brain Substantia Nigra	brain
36	chr7:100862600-100866200	Weak transcription	Osteobl	bone
37	chr7:100862600-100866600	Weak transcription	Primary B cells from cord blood	blood
38	chr7:100862600-100866800	Weak transcription	Aorta	Aorta
39	chr7:100862600-100866800	Weak transcription	HSMMtube	muscle
40	chr7:100862600-100868000	Weak transcription	HSMM	muscle
41	chr7:100862800-100864800	Weak transcription	Fetal Thymus	thymus
42	chr7:100862800-100865400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:100862800-100865600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:100862800-100866000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:100862800-100875400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:100863000-100865200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr7:100863000-100865200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr7:100863200-100865000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr7:100863200-100865000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:100863200-100865000	Weak transcription	Brain Inferior Temporal Lobe	brain

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